Lolium rigidum (rigid ryegrass): 124655478
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Entry
124655478 CDS
T09103
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2-like
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124655478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124655478
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
124655478
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
HP1454-like_middle_dom
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
124655478
NCBI-ProteinID:
XP_047050320
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Position
5:complement(204864375..204870098)
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AA seq
452 aa
AA seq
DB search
MDCPYLDTVNRQVLNFDFEKFCSISLSNLNVYACLVCGKYYQGRGLKSHAYTHSLEAGHH
VFINLQTEKVYCLPDGYEINDPSLEDIRHVLNPRFARELVLNLDKNRQWSRALDGSNYLP
GMVGLNNIKETDFVNVTIQSLMRITPLRNFFLIPENYQHSKSPLVHRFGELTRKIWHARN
FKGQISPHEFLQAVMKASEKRFQIGVQSDPVEFMSWLLNTLHAKLRSCKKKNWSIIYDCF
QGELEVVKDIHRHHILGDQQNGEAGSQIETTINGLDTETSRVPFLMLSLDLPPPPLFKDA
MEKNIIPQVPLFNILKKFDGEAVTEVVRPSISRVRYRVMRLPKYMIFHMRRFTKNTFFVE
KNPTLVNFPVKNLELKDYIPLPKPIENEKLRSKYDLVANIVHDGKPGEGCHRVFVQQKSE
EAWYMQDLHVTETLPQMVALSEAYMQIYEQQE
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggactgcccttacctcgacaccgtgaatcgacaggtccttaatttcgactttgaaaag
ttctgctcaatctccttatcaaatttgaatgtgtatgcatgcctagtttgtgggaagtat
taccaaggaagagggctaaaatcacatgcatatacccacagccttgaggcaggccaccat
gtgttcattaaccttcaaactgagaaagtttattgtcttcctgatggatatgagattaac
gatccatcactagaagatattcgacatgttctcaatccaaggttcgcgagagagctggtt
ctaaatcttgataagaacaggcagtggtcaagggctctggatggctccaattatctacct
ggaatggttggtcttaacaacattaaggagactgactttgtgaacgtcaccatacaatca
ttaatgagaattactcctttgagaaatttctttctcatacctgaaaattaccagcatagc
aaatctccattagttcatcgctttggagaactaactcgcaagatttggcatgctaggaac
ttcaagggccaaattagtccacatgagttccttcaagcagttatgaaggccagcgaaaag
aggtttcagattggtgtccagtctgatccagtcgaatttatgtcatggctcttgaacaca
ctgcatgccaagctaagaagttgcaagaagaaaaattggagcatcatatatgattgcttt
cagggagaacttgaagttgtaaaggatattcacaggcatcatatattgggagatcagcag
aatggtgaggcaggttcacagattgaaacaacaatcaacggtttggacacggaaacttct
agggtcccattcttgatgctcagtcttgatcttccacctccacctcttttcaaagatgct
atggagaaaaatattattccacaggtaccgctgtttaatatactgaagaagtttgatggc
gaggcagttacggaggtggtgcggccatctatttctcgggtgaggtaccgagtcatgcga
cttccaaagtatatgatctttcatatgcggcggtttaccaaaaataccttctttgtagag
aaaaaccctacactagtaaattttcctgtgaagaacttggagttgaaggattacattcca
ctgcctaagccaatagagaatgagaagctccgctcaaagtatgatctcgtagccaacatt
gtacacgatggaaaaccgggagaaggatgccacagagtatttgtgcagcagaaatcggaa
gaggcatggtatatgcaggatctccatgtcaccgagacccttccacagatggtagctctc
tcggaagcctacatgcagatatatgagcaacaggaatga
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