Lolium rigidum (rigid ryegrass): 124656516
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Entry
124656516 CDS
T09103
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124656516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124656516
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124656516
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
ANAPC4_WD40
WD40_RFWD3
WDR90_beta-prop_4th
WD_LRWD1
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_SCAP
Beta-prop_Nup120_160
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
124656516
NCBI-ProteinID:
XP_047051199
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Position
5:complement(144630903..144632033)
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AA seq
376 aa
AA seq
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MDEQMQYPFFTEGTRELLQARVDIAHYSLPRAKARLESAKQPCLRLGDSGEDPDNHVVKR
AGDFVLDCSEIGDDRPLTACSFSRDASMLATSSWSGITKVWSITPPGITKMAALKGHTER
ATDVVFSPADNCILATASADKTAKLWNISSDNRSLLTSFHGHQDRLARLAFHPSERYLGT
ASFDKTWRLWDVNTGTQLLLQEGHSRGVYGVGFHPDGSLAASCGLDAHALVWDLRSGRLY
YTLTGHVSPVLGVSFSPNGRLVATAGEDNFCRIWDLRMTGKLLYSIPAHKSLVSQVKFAP
RDGAYLATSSYDATAALWSAQDYKPIKTLDGHESKVTGLDISGDGQQIVTVSHDRTIKMW
SCGRRSSTRDKEMELD
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcagatgcaatacccgttcttcaccgagggcaccagggaactgctccaggcg
cgcgtcgacatcgcccactactcactgcctcgtgctaaggccaggctcgagagtgccaag
cagccctgcctccgtctcggtgactccggcgaggaccccgacaaccatgtcgtgaagcgg
gcgggggacttcgtcctcgactgcagcgagatcggagacgaccgcccgctcaccgcctgc
tccttctcccgcgacgcgtcaatgctcgccacgagctcctggagcgggatcaccaaagta
tggagcatcacgccaccagggataaccaaaatggcggccctcaaaggccacacagaacgt
gctacagatgtcgttttctctccagccgataactgcatactagcaacagcctccgcagac
aaaaccgccaaactatggaatatcagcagcgacaacaggtcacttctaacgtcttttcac
ggtcaccaggatcgtcttgctcgcctcgccttccatccatccgaaagataccttggcacg
gccagcttcgacaagacctggagactctgggatgtcaacaccgggacacagctcctgctc
caggaggggcatagcagaggtgtatatggagtcggcttccatcctgacggctccctagct
gcatcctgtgggcttgatgcgcacgctctggtctgggacctaagatctggaagattatac
tataccctcacaggacatgtgagtcctgtcctgggagtcagcttctcccctaatggtcgt
ctagttgcaaccgcgggtgaggacaatttctgtcgaatatgggatctgaggatgactgga
aagttattgtattctatacccgcacataaaagtcttgtctcgcaggtgaagtttgcgccc
cgggatggtgcttatctggcgacgtcttcctatgacgctacagcggcgctatggtcagcc
caggattacaaaccgataaaaactttggatggccatgagtccaaggttactggcttggat
atcagtggtgatgggcagcagatcgtgactgtttcacatgatcgaaccataaagatgtgg
tcatgcggcaggagaagcagcacgcgggataaggagatggagttggattaa
DBGET
integrated database retrieval system
