Lolium rigidum (rigid ryegrass): 124656517
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Entry
124656517 CDS
T09103
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124656517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124656517
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124656517
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD_LRWD1
Ge1_WD40
Beta-prop_SCAP
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
WDR54
eIF2A
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
124656517
NCBI-ProteinID:
XP_047051200
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Position
5:145582008..145583141
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AA seq
377 aa
AA seq
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MAKDEQMQYPFFTEGTRELLQARINIAHYSLPRAKARLERANKQPRLGDSGEDPDNHVVK
RAGDFVLNCSEIGDDRPLTACSFSRDASMLATSSWSGITKVWSITPPGITKIAALKGHTE
RATDVAFSPADNCLLATASADKTAKLCNISSDNRSLLTSFHGHQDRLARLAFHPSGRYLG
TASFDKTWRLWDVNTGTQLLLQEGHSRGVYGVGFHPDGSLAASCGLDAHALVWDLRSGRL
YYTLTGHVSPVLGVSFSPNGRLVATAGEDNFCRIWDLRMTGKLLYSIPAHKSLVSQVKFE
PRDGAYLATSSYDTTTALWSAQDYRPIKTLDGHDSTVTGMDISGDGQQIVTVSHDRTIKI
WSCSTSSTRRDNEMQLD
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggacgagcagatgcaatacccgttcttcacggagggcaccagggaactgctc
caggcgcgcatcaacatcgcgcactactccctgcctcgtgctaaggccaggctcgagagg
gccaacaagcagccccgcctcggtgactccggcgaggaccccgacaaccatgtcgtgaag
cgggcaggggacttcgtcctcaactgcagcgagatcggagacgaccgcccgctcaccgcc
tgctccttctcccgcgacgcgtcaatgctcgccacgagctcctggagcgggatcaccaaa
gtatggagcatcacgccaccagggataaccaaaatcgcggccctcaaaggccacacagaa
cgtgctacagatgtcgctttctctccggccgataactgcctactagcaacagcctccgcg
gacaaaaccgccaaactatgtaatatcagcagcgataacaggtcacttctaacgtctttt
cacggtcaccaggatcgtcttgctcgcctcgccttccatccatccggaagataccttggc
acagccagcttcgacaagacctggagactttgggatgtcaacaccgggacacagctccta
ctccaggaggggcatagcagaggtgtatacggagtcggcttccaccctgacggctcccta
gctgcatcctgtggacttgatgcgcacgctctggtctgggacctaagatctggaagatta
tactataccctcacagggcatgtcagtcctgtccttggagtcagcttctcccctaatggt
cgtctagtcgcaaccgcgggtgaggacaatttttgtcgaatatgggatctgaggatgact
ggaaagttgttgtattccataccggcacataagagtcttgtttcgcaggtgaagttcgaa
ccccgggatggtgcttatctggcgacgtcttcctatgacactacaacggcgctatggtca
gcccaggattacagaccaataaaaactttggatggccatgactccacggttaccggtatg
gatatcagtggagatgggcagcagatcgtgactgtttcacatgatcgaaccataaagatt
tggtcatgcagcacaagcagcacgcggcgggacaatgagatgcagttggattaa
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