Lolium rigidum (rigid ryegrass): 124657470
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Entry
124657470 CDS
T09103
Name
(RefSeq) histone-binding protein MSI1-like
KO
K10752
histone-binding protein RBBP4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03082
ATP-dependent chromatin remodeling
lrd03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124657470
03083 Polycomb repressive complex
124657470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lrd03036
]
124657470
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
124657470
Histone modification proteins
HAT complexes
HATB complex
124657470
HDAC complexes
Sin3A-HDAC complex
124657470
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
124657470
PRC2.2
124657470
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
124657470
Heterochromatin formation proteins
Other heterochromatin formation proteins
124657470
Chromatin remodeling factors
NuRD complex
124657470
NuRF complex
124657470
NuRF complex (fruit fly)
124657470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
CAF1C_H4-bd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
WD_LRWD1
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR19_1st
MIOS_WD40
Beta-prop_SCAP
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_RIG_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
124657470
NCBI-ProteinID:
XP_047051972
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All DBs
Position
5:complement(253879906..253884282)
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AA seq
397 aa
AA seq
DB search
MDGGSSFPAAAAAAAMETEEHLNWKKNAPVLYDLVISHPLEWPSLTVQWLPSAAARSHQL
VLGTHAEDAPNHLMLVDAVLPLPPRLAAAAAAEGAALPAPSVSIFRSAPHQGEVNRARCM
PQRPYTVATKTCVDEVHVYHLADDGQKAGADVVLRGHGAEGYGLAWSPMKEGWLLSGSYD
KKICLWDLASGSGAPVLDAHQVFEAHEDMVEDVAWHLKGDNLFGSVGDDCKLMIWDLRTN
KAEQSVVAHQKEVNSLSFNPFNEWILATASGDATIKLFDLRKLSRSLHTFDSHEGEVFQV
EWNPNLETVLASHAADKRVMIWDVSRIGDEQAEEDASDGPPELLFVHGGHTAKISELSWN
PSEKWVVASVAEDNVLQIWEMAESIYSDDSNASSLST
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggacggcggctcctccttcccggccgccgccgccgccgcggcgatggagacggaggag
cacctgaactggaagaagaacgcgccggtgctctacgacctcgtcatctcccacccgctg
gagtggccctcgctcaccgtccagtggctcccgtcggccgccgcccgctcccaccagctc
gtcctcggcacccacgccgaagacgcccccaaccacctcatgctcgtggacgccgtcctc
ccgcttcccccgcgcctggccgcggcggcggccgccgagggcgccgccctcccggccccc
tccgtgtccatcttccgctcggcgccgcaccagggcgaggtcaaccgcgcccggtgcatg
ccgcagcggccctataccgtggccaccaagacctgcgtcgacgaggtgcacgtgtaccac
ctcgccgacgacggccagaaggccggcgccgacgtcgtgctcaggggccatggcgccgag
gggtacgggctcgcgtggagcccgatgaaggaggggtggctgctgagcggctcgtatgat
aagaagatctgcctgtgggatctcgcgtccgggagtggagccccggttctggatgcgcat
caggtgttcgaggctcacgaggatatggttgaagatgtagcttggcacctgaaaggcgac
aacctatttggttctgttggcgatgactgcaagctcatgatttgggacttgcgtacgaac
aaagcagaacaatctgtagtagcacaccagaaggaagttaactccttgtccttcaatcca
tttaacgaatggatcttggctacagcatctggcgatgcaactattaagctgtttgacttg
cgaaagctatcaagaagcttgcatacattcgacagccatgagggggaggttttccaggtt
gagtggaatccgaacttggagactgtattggcttcccatgcagcagacaaaagggtgatg
atatgggacgttagcaggatcggagatgagcaggcggaggaagatgcaagcgatggacca
ccggagctgctcttcgtccacggtggtcacacagcgaagatctcggaactgtcctggaac
cctagcgagaaatgggttgtggccagcgtggcggaggataacgtgctgcagatctgggag
atggcagagagcatatactccgatgacagcaacgcctcttccctgtccacataa
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integrated database retrieval system
