Lolium rigidum (rigid ryegrass): 124657628
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Entry
124657628 CDS
T09103
Name
(RefSeq) uncharacterized protein LOC124657628
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124657628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124657628
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124657628
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124657628
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124657628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
124657628
NCBI-ProteinID:
XP_047052103
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Position
5:complement(266613221..266618248)
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AA seq
872 aa
AA seq
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MRASMDAPSARRSAAPDPGAAPKKPRLLAPPPSRDPRSSYAAAANGARASADAAAEQQAQ
VDELVAQYRTALGELTFNSKPIITNLTIIAGENLHATRAIAALVCNNILEVPSDQKLPSL
YLLDSIVKNIGKDYIKHFSARLPEVFCKAYKQVDPPVHSSMRHLFGTWKGVFSPASLQMI
EKELGFQSSTNGSSGSAASKPDSQSQRPSHSIHVNPKYLEARQQLQQPNKGLLGAGAKTA
IISDDDDDVDRVNTIAIDKGAGRRLDNLNSRPRAQRDPFSNPIHEKPDRDIRGLGFSSIS
QQPVGAGQVRSKSKGQDGIGGSYYTGGVSSSEEQFDRRSNFYANKDTRPPGSDRFVSALL
PTPVSTSDRTGRLSANKSWKNSEEEEYMWDDLHTQGADYGVASSARKGELMAEDGNISSF
QRAKWSELGDHLDPDFRKQDTIPRFGHETGQDRRIAAYMDREEYLHSKRELEPRIDREMW
PEGQQFPDSRVSSLWSSQEKTRPDIARDPRISRFSNQSASITSSVPVGLSGAYAGRSSLE
SATSGPTTFGQQKHKQWSPSPPPVQAPSSTASFARQSSPSSVEHDMYASRSSFLLSQNPL
EEHNQRAHALSQGATHSQGRPNLQATPPHTSSQTQKHPSVLSKPHLKPPNNLFPQDSSSS
SLFRPSIHLPPEEVPLPSDPAHVNSDQVSASNLLAGLLKSGFKPNTGDHASSRAQPPLPF
VMPCLPAASASENATLKPHVPNSVRPPLPPGPPPTQKADNPAPLSSLLSSLVAKGLISSP
STDSSAALPGKPSKSSPSTSGVSASPPPLQIVQPSVGKEKSAPKRLCCPNLLKSRRLTLS
VLSSCQHCFVSSIRMWLTASLMTNAINVKHVV
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcctccatggacgccccctctgcccgcagatccgccgcgccggacccgggcgcc
gcccccaagaagccgcgcctcctcgcgcccccgccatccagggaccccagatcctcctac
gccgccgccgccaacggtgccagagccagcgcggatgcggcggcggagcagcaggcgcag
gtggacgagctggtggcgcagtaccggacggcgctcggggagctcaccttcaactccaag
cccatcatcaccaacctcaccatcatcgccggcgagaacctccacgccaccagggccatc
gccgccctcgtctgcaacaacatcctcgaggttccaagtgatcagaagctaccatctctt
tatctgcttgacagtatagtcaagaatattggaaaagattatattaaacatttttctgca
agattacctgaggttttttgcaaggcatataaacaggttgatcctcctgtacattctagc
atgaggcacctttttggaacatggaaaggagtgttttctccagcttcacttcaaatgatt
gaaaaggaacttggttttcaatcatctactaatggatcttcaggttctgcagcatcaaag
cctgattctcaatcccagcgcccatcccacagcattcatgttaaccccaaatatttggaa
gcaagacaacagctccaacaaccaaataaggggctactgggagccggtgccaagacggca
ataatttctgatgacgatgatgatgtcgacagggttaacacaatagctattgacaaaggt
gcagggagacggctggataatcttaactctagaccccgcgctcagagggacccttttagt
aatcctattcatgagaagccagatagagatatcaggggccttggattttccagcatctca
caacagcctgttggagctggtcaagttcgttcaaagtccaaaggccaagatggaatcggg
ggatcatattatactggaggtgttagttcttctgaagagcaatttgacagacgcagcaac
ttttatgcaaataaagatactcggcctccaggatctgatcgttttgtctctgcacttcta
ccaactcctgttagtacttctgataggactggtaggctgtcagctaacaaaagctggaag
aactctgaggaagaagagtacatgtgggatgatttacatactcaaggagcagattatgga
gttgccagttctgcaagaaaaggagaattgatggctgaggatggcaatatttcaagcttt
cagagggctaaatggtcagagctgggagaccatttggaccctgacttccgcaaacaagat
accatccctagatttggacatgaaacaggccaagatagaagaatcgcagcatatatggat
cgtgaagagtaccttcacagcaagcgtgagttggaaccaagaatagatagggaaatgtgg
cctgaaggacaacagtttccagattctcgtgtttcctctctctggtcatcccaggagaaa
actcgcccagacattgcgcgggatcccaggatatcaagattttccaaccagtcagcaagc
atcacttcatctgtacctgtaggattatcaggagcctatgctggacggtcaagcctggaa
agtgcaactagtggtcctacaacttttgggcaacaaaaacataaacagtggtcaccttcc
ccgccacctgtccaggcaccttcatctactgcatcatttgcgcgccagagctccccaagc
tctgtggagcatgatatgtatgcttccagatcatctttcctattgagccaaaatcccctg
gaggaacataaccaaagagctcatgccttgtctcaaggtgctacgcactctcagggccgg
cctaatcttcaagcaacaccaccacatacttcctcgcagactcaaaagcacccttctgtt
ctgtcaaagccacatctcaagccacctaacaatctctttccgcaagacagttcatcatca
tcgctgtttaggccttctatccatctgccacctgaagaagttcccttgcccagtgaccca
gcacatgtaaactcggatcaggtaagtgctagtaacttgttggctggtcttctaaagagt
ggattcaaaccgaacacaggtgatcatgctagctcgagggcacaacctcctcttccattt
gtcatgccatgtcttccggctgcttcagccagtgaaaatgctactttgaagcctcatgtc
ccaaactctgttcgcccacctttgccaccaggcccgccaccaacgcagaaagctgataat
cctgcaccgctctcaagtcttctcagtagtctggttgcaaaggggctaatttcttcaccg
tccactgattcgtctgctgcgttgccaggaaagcccagcaaatcaagtccgagcacatct
ggtgtcagtgcttcacctccacctttgcagattgtccagccttcagttggcaaggagaaa
tctgccccaaaaagactttgttgccccaacctgttgaaatcaagacggctgaccttatcg
gtcttgagttcatgccagcactgcttcgtgagttccatacgcatgtggttgacagcctct
ttgatgaccaatgccatcaatgtaaaacatgtggtctaa
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