Lolium rigidum (rigid ryegrass): 124657634
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Entry
124657634 CDS
T09103
Name
(RefSeq) uncharacterized protein LOC124657634
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124657634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124657634
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124657634
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124657634
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124657634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDR1_CTR1_ARMC3_pept
PK_Tyr_Ser-Thr
Pkinase
zf_PCFS4
CID
ABC1
Haspin_kinase
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
124657634
NCBI-ProteinID:
XP_047052109
LinkDB
All DBs
Position
5:complement(266845405..266862109)
Genome browser
AA seq
1797 aa
AA seq
DB search
MDLPAATGGGRRTSYSLLSQFPDDPAAPAVLQRQSSGGSSYGPGSSVSGSSDYPFNHHLP
PASAAPAAASGGTPKSWAQQAEETYQLQLALALRLCADAACAADPGFLDPGDGKMMGGPG
PGGSGSSGRAFPLAPPTPTAEALSHRFWVNGSLSYSNTIPDGFYLIQGMDPFVWSMCTDV
HEENRIPSVESLRSVRPGDSSIQVVLVDRRADFDLGMLENYAASFLSSSADIKDVINQLA
KLVSSRMGGTASNEENLLPRWKESSEAITSSSGSIVLHLGKLPIGLCKQRSLLFKMLADK
VNVPCRLVKGCKYCKAEDASSCVVRFGLEREYLVDLIGEPGQLSDPDSFVNGPYSLSVPS
PLRPPKFRSLEITSNFSSVAKQYFSDCHSLNLLFSDASTGASSGAAVAVDQMYSKKHDAG
DGIASGWVPVKGQPTINSDIILPEAPREILPLMTSSNLTADKKKEFQLLEGNQYLRSTVS
DLSLAVDDLIIPWSELVLKEKIGAGSFGTVHRADWHGSDVAVKILMEQDYHLDRFREFMR
EVAIMKSLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLYKLLHRTGAREVLDERRRLNMA
FDVAKGMNYLHRRSPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTYLSSKSLAGTP
EWMAPEVLRDEPSNEKSDVYSFAVILWELMTLQQPWCNLNPAQVVAAVGFKGRRLEIPID
LNPQVAALIESCWANEPWKRPSFANIMETLRPLINKVAVPQLLRSDSYRPAQPRPAAMRA
SMDAPSARRSAAPDPGAAPKKPRLLAPPPSRDPRSSYAAAANGARATADAAAAAAAVAEQ
QAQVDELVAQYRTALGELTFNSKPIITNLTIIAGENLHATRAIAALVCNNILEVPSDQKL
PSLYLLDSIVKNIGKDYIKHFSARLPEVFCKAYKQVDPPVHSSMRHLFGTWKGVFSPASL
QMIEKELGFQSSTNGSSGSAASKPDSQSQRPSHSIHVNPKYLEARQQLQQPNKGLLGAGA
KTAIISDDDDDVDRVNTIAIDKGVGRRLDNLNSRPRAQRDPFSNPIHEKPDRDIRGLGFS
SISQQPVGAGQVRSKSKGQDGIGGSYYTGGVSSSEEQFDRRSNFYANKDTRPPGSDRFVS
ALLPTPVSTSDRTGRLSANKSWKNSEEEEYMWDDLHTQGADYGVASSARKGELMADDGNI
SSFQRAKWSELGDHLDPDFRKQDTIPRFGHETGQDRRIAAYMDREEYLHSKRELEPRIDR
EMWPEGQQFPDSRVSSLWSSQEKTRPDIARDPRISRFSNQSASITSSVPVGLSGAYAGRS
SLESATSGPTTFGQQKHKQWSPSPPPVQAPSSTASFARQSSPSSVEHDMYASRSSFLLSQ
NPLEEHNQRTHALSQGATHSQGRPNLQATPPHTSSQTQKHPSVLSKPHLKPPNNLFPQDS
SSSSLFRPSIHLPPEEVPLPSDPAHVNSDQVSASNLLAGLLKSGFKPNTGDHASSRAQPP
LPFVMPCLPAASASENATLKPHVPNSVRPPLPPGPPPTQKADNPAPLSSLLSSLVAKGLI
SSPSTDSSAALPGKPSKSSPSTSGVSASPPPLQIVQPSVGKEKSAPKKTLLPQPVEIKTA
DLIGLEFMPALLREFHTHVVDSLFDDQCHQCKSCGLRFRLEEDLSEHAASHESGSSEPRN
SGIAPERWYPNKKRWIDRSPEPQDIFLDSDTELCSAEEGCEFMVPADESQIICALCGEQF
EDTYSIDKGEWMYKGAVYYDYSKVESNRGGVVKSQERAPIVHGRCMPRIADDGMEED
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atggacctcccggccgccacgggcggaggccggcgcacgagctactcgctcctctcgcag
ttccccgacgacccggcggcgccggccgtcctgcagcgccagtccagcggcggcagcagc
tacgggcccgggagctccgtctccggctccagcgactaccccttcaaccaccacctcccc
cccgcctcggccgcccccgccgccgcctccgggggcacgcccaagagctgggcgcagcag
gcggaggagacgtaccagctgcagctcgccctcgcgctccgcctctgcgccgacgccgcc
tgcgccgccgacccgggattcctcgaccccggggacggcaagatgatgggcgggcccggg
cccggggggagtgggagcagcggcagggcgttcccgctcgcgccgcccacgcccaccgcc
gaggcgctctcgcaccgcttctgggtaaatggctcgttatcatacagcaacacgatacca
gacgggttctacctcatccaagggatggaccccttcgtgtggtcgatgtgcaccgacgtg
cacgaggagaaccgcataccctctgtggagtcgctcaggtccgtccgccccggcgactcc
tccatccaggtggtcctcgtcgacaggagggccgacttcgatctggggatgctggagaat
tatgcggccagcttcctgtccagctctgccgacatcaaggatgtgatcaaccagctggcc
aaactcgtgtcttccagaatggggggtacagcttccaatgaagaaaacctgcttccacgc
tggaaggagagcagcgaggcgatcacgtcgagttcaggatctattgtgcttcatctgggg
aagttgccgattggtctctgcaagcagcgctctttgcttttcaaaatgttagcagataaa
gtcaacgtaccatgcagattagtcaagggttgtaaatactgcaaagctgaggacgcctcc
tcctgtgttgtacgttttgggcttgaaagggaatacttggttgacttaatcggggagcct
ggccaactatctgatcctgattcctttgtcaatggcccctactcgctatcagtgccatca
cctctccgtcctccaaaatttaggtcattagagatcacttcaaatttcagctcagttgcc
aagcaatacttctcagattgtcactcgctcaatctattgttcagcgatgcttccacaggt
gcttctagtggtgctgcagttgctgtggaccaaatgtattcgaagaaacatgatgcaggg
gatgggattgcgagcggctgggtgccggtgaaagggcaaccaactataaactcggacatt
attctgccagaagctcctcgggagattttgccacttatgacttcctccaatttaacagct
gataaaaagaaagaatttcagctactcgaggggaatcagtatctacggagtacagtaagt
gatctgtcacttgctgtggatgatctgataattccatggagtgagctggttttaaaggag
aagattggagcaggttcttttggaacagttcatcgtgctgactggcatggatcggatgtt
gctgtgaagatactgatggagcaggattatcatctagatcgcttcagagaatttatgaga
gaggtcgcaataatgaaaagtctgaggcatccaaatattgttctcttcatgggtgctgtt
actgaacccccaaacctatcaatagttacggaatacttgtcaagaggtagcttgtataaa
cttttgcataggactggtgcaagggaggttctggatgagaggcgccgtttgaacatggcg
ttcgatgtggcgaagggaatgaactatctgcatagacgtagcccccctatcgttcaccgt
gatttgaagtctccaaatcttctagtcgacaagaagtatactgtgaaggtatgtgacttt
ggcctttcacgactgaaagccaacacctatctgtcctcgaagtctttggccggaactcct
gaatggatggcgcctgaagtgcttcgagatgagccgtccaatgagaagtctgatgtctac
agtttcgctgtgatcctatgggaacttatgacattacaacaaccatggtgcaacctgaat
cctgcccaggtagttgctgctgtaggctttaaaggaagaagacttgaaattccaatagat
ttgaatcctcaagtagctgcgttgatcgaatcctgctgggctaatgagccatggaagaga
ccctcatttgctaatatcatggaaactttgagacctttgattaataaggttgcggtgccg
cagttgctccgttcagactcataccggcccgcccagccccgccccgccgccatgcgcgcc
tccatggacgccccctcggcccgcagatccgccgcgccggacccgggcgccgcccccaag
aagccgcggctcctcgcgcccccgccgtccagggaccccagatcctcctacgccgccgcc
gccaacggtgccagagcgaccgcggatgcggctgcggccgccgcggcggtggcggagcag
caggcgcaggtggacgagctggtggcgcagtaccggacggcgctcggggagctcaccttc
aactccaagcccatcatcaccaacctcaccatcatcgccggcgagaacctccacgccacc
agggccatcgccgccctcgtctgcaacaacatcctcgaggttccaagtgatcagaagcta
ccatctctttatctgcttgacagtatagtcaagaatattggaaaagattatattaaacat
ttttctgcaagattacctgaggttttttgcaaggcatataaacaggttgatcctcctgta
cattctagcatgaggcacctttttggaacatggaaaggagtgttttctccagcttcactt
caaatgattgaaaaggaacttggttttcaatcatctactaatggatcttcaggttctgca
gcatcaaagcctgattctcaatcccagcgcccatcccacagcattcatgttaaccccaaa
tatttggaagcaagacaacagctccaacaaccaaataaggggctactgggagccggtgcc
aagacggcaataatttctgatgatgatgatgatgtcgacagggttaacacaatagctatt
gacaaaggtgtagggagacggctggataatcttaactctagaccccgcgctcagagggac
ccttttagtaatcctattcatgagaagccagatagagatatcaggggccttggattttcc
agcatctcacaacagcctgttggagctggtcaagttcgttcaaagtccaaaggccaagat
ggaatcgggggatcatattatactggaggtgttagttcttctgaagagcaatttgacaga
cgcagcaacttttatgcaaataaagatactcggcctccaggatctgatcgttttgtctct
gcacttctaccaactcctgttagtacttctgataggactggtaggctgtcagctaacaaa
agctggaagaactctgaggaagaagagtacatgtgggatgatttacatactcaaggagca
gattatggagttgccagttctgcaagaaaaggagaattgatggctgatgatggcaatatt
tcaagctttcagagggctaaatggtcagagctgggagaccatttggaccctgacttccgc
aaacaagataccatccctagatttggacatgaaacaggccaagatagaagaatcgcagca
tatatggatcgtgaagagtaccttcacagcaagcgtgagttggaaccaagaatagatagg
gaaatgtggcctgaaggacaacagtttccagattctcgtgtttcctctctctggtcatcc
caggagaaaactcgcccagacattgcgcgggatcccaggatatcaagattttccaaccag
tcagcaagcatcacttcatctgtacctgtaggattatcaggagcctatgctggacggtca
agcctggaaagtgcaactagtggtcctacaacttttgggcaacaaaaacataaacagtgg
tcaccttccccgccacctgtccaggcaccttcatctactgcatcatttgcgcgccagagc
tccccaagctctgtggagcatgatatgtatgcttccagatcatctttcctattgagccaa
aatcccctggaggaacataaccaaagaactcatgccttgtctcaaggtgctacgcactct
cagggccggcctaatcttcaagcaacaccaccacatacttcctcgcagactcagaagcac
ccttctgttctgtcaaagccacatctcaagccacctaacaatctctttccgcaagacagt
tcatcatcatcgctgtttaggccttctatccatctgccacctgaagaagttcccttgccc
agtgacccagcacatgtaaactcggatcaggtaagtgctagtaacttgttggctggtctt
ctaaagagtggattcaaaccgaacacaggtgatcatgctagctcgagggcacaacctcct
cttccatttgtcatgccatgtcttccggctgcctcagccagtgaaaatgctactttgaag
cctcatgtcccaaactctgttcgcccacctttgccaccaggcccgccaccaacgcagaaa
gctgataatcctgcaccgctctcaagtcttctcagtagtctggttgcaaaggggctaatt
tcttcaccgtccactgattcgtctgctgcgttgccaggaaagcccagcaaatcaagtccg
agcacatctggtgtcagtgcttcacctccacctttgcagattgtccagccttcagttggc
aaggagaaatctgccccaaaaaagactttgttgccccaacctgttgaaatcaagacggct
gaccttatcggtcttgagttcatgccagcactgcttcgtgagttccatacgcatgtggtt
gacagcctctttgatgaccaatgccatcaatgtaaatcatgtggtctaagattcagactt
gaagaggatctcagtgaacatgctgccagccacgaatcaggctcttccgagcctagaaac
agtggcatcgcacctgaaagatggtaccctaacaagaagcgctggattgatagatcacct
gaaccgcaggacatcttcctggactctgatacagagttgtgctctgcagaggaaggttgt
gagtttatggttcctgcagacgagagccagattatctgtgcactttgcggggagcaattt
gaggacacatattccatcgataagggtgagtggatgtacaagggtgctgtctattatgat
tactcaaaggtagaaagcaaccgcggtggcgttgtgaagagtcaagagcgtgcacccatt
gtccatggaagatgcatgccaaggattgcagacgatggcatggaggaggattag
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