Lolium rigidum (rigid ryegrass): 124658086
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Entry
124658086 CDS
T09103
Name
(RefSeq) exosome complex component csl4-like
KO
K07573
exosome complex component CSL4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124658086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124658086
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
124658086
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
124658086
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
CHASE5
ECR1_N_2
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
124658086
NCBI-ProteinID:
XP_047052481
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All DBs
Position
5:270375461..270377932
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AA seq
203 aa
AA seq
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MAASAMEHDGGGGGGAEVVTPGELLGASSSLAAGRGAYADGHSVRASVTGRRRILPPTPG
SSDQRSTVEVVGHKAHGAVPQPGSVVIARVTKVMARMASADIMCVDSKAVKEKFTGMIRQ
QDVRATEIDKVDMYQSYRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAQSIAGGTLVP
TSWTEMQCELTGQIEQRKVAKVE
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atggcagcctcggcgatggagcacgacggcggcggcggcggcggcgcagaggtggtcacc
ccgggcgagctcctcggggcctcctcctccctcgcggccgggcgcggcgcctacgccgac
ggccactccgtgcgcgcgtcggtcaccggccgccgccgaatcctgccccccactcccggc
tcctccgaccagaggtccacggtggaggttgtcgggcacaaggcgcacggagccgtcccg
cagcctggaagcgtcgtcattgcccgtgtgacaaaggttatggctaggatggcttctgca
gatattatgtgtgttgactcaaaggctgtcaaggaaaagttcactggcatgataaggcag
caagatgttcgtgcaactgagattgataaggtggatatgtaccagtcatatcgacccggt
gacattgtcagagctctggttctctctcttggtgatgcaagggcctactacctttcaact
gccaagaatgaacttggagttgtttctgcccaaagtatagctggtggtactctggtacca
acaagttggactgagatgcagtgtgagttgactggccaaattgagcaaagaaaagttgca
aaagtggaatag
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