Lolium rigidum (rigid ryegrass): 124658166
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Entry
124658166 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28-like
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124658166
03009 Ribosome biogenesis [BR:
lrd03009
]
124658166
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124658166
Spliceosome [BR:
lrd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124658166
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Helicases
124658166
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
124658166
NCBI-ProteinID:
XP_047052540
LinkDB
All DBs
Position
5:82683644..82693739
Genome browser
AA seq
777 aa
AA seq
DB search
MDPDFRFDPDGSDDEAAAAAASARRKPAQSPWEFSTYAQSVAAEHASRRTTSIDEKISQA
LRGRRNPSMPDGSEDDEEEDAAADDDDSDDEAVKGESGDEEDELEDSDDDEESEEGEEVD
EDESGEEDGEEEEEEEAAQEDDDTPEQSGTPDPSKFFASSEGASFSANSFLELNLSRPLI
RACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRIPAI
RVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLPTKVQEVALRSNPDIVVATPGRI
IDHLRNSLSVGLEDLAILILDEADRLLELGFSVEINELIRMCPKRRQTMLFSATMTEQID
ELVKLSLNKPIRLEADPSLKRPATLTEEVVRIRRSREANQEAVLLALCLKTFKERVIIFS
GTKHSAHRLKIMFGLSGMKAAELHGNLTQAQRLEALEQFKKQEADILIATDIAARGIDIV
GVRTVINFACPRDVTTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRI
VAEKPVADCAKLIEQLEHQISNIILEEREEMALRKAEMEATKAENMIAHKDEIYSRPKRT
WFATEKEKKTLAKAAKESMGQVKSGSGVVSAQQAEDLRLKEKRRREREKNLPRKKRRKLE
AQREMLEDDRADEEEAQESEGGKKAKNSQSVVDVAYRRAKSMKATGKKGIVAVKGKNEKK
AKQPSDKGQTRQEEMHELFQNDMSEWKQGRALKKKDSSFAKKSKNSFKSKSRYKRRK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggaccccgacttccggttcgacccggacggttccgacgacgaggcggcggcggcggcg
gcctccgcgcggcgcaagccagcgcagtctccgtgggagttctccacgtacgcgcagtcc
gtggcggcggagcacgccagccgccgcaccacctccatcgacgagaagatctcccaggcc
ctcaggggacgacgcaacccctctatgcctgacggatcagaggacgacgaggaggaggat
gctgctgctgatgacgatgatagcgacgatgaggcggtgaagggggagagcggggacgag
gaggacgagctagaggacagcgacgacgacgaagagagcgaggagggggaggaggtggac
gaggatgaaagcggggaggaggatggcgaagaggaggaagaagaagaggctgcacaggag
gatgatgatacacccgaacagagcggcactccggatccttccaagtttttcgcgtcgtcg
gaaggagcgtccttcagcgcaaattcctttcttgagctcaacctatcacgtccactcatt
cgagcttgtgaagcacttggctaccagaaaccaacacctattcaggctgcatgcatacct
ttagcattaacagggcgggatatatgtggcagcgctataacggggtcagggaagacagct
gctttctctctgcctgtgctggagcgtctacttttccggccaaagcgtatacctgctatt
agggtgcttattcttactccaactagagagttggctgctcaggtccacagtatgattgaa
aaattagcccagtttaccgatatcaggtgctgtctcatagttggtggacttccaacgaag
gtacaagaggtagctttaaggtcaaatcctgacattgttgttgccactcctggtcgcata
atagatcatctacgcaattccctttctgttggccttgaagatcttgcaattttgatcctt
gatgaagctgaccgtttgctggaactgggtttcagtgttgaaattaatgaactgattcgc
atgtgtcctaaaagaaggcagacaatgctcttttctgctacaatgacagagcaaattgat
gaacttgtgaaactttcactaaacaaaccaattcgtcttgaagccgatccatcgctgaaa
cgccctgcaacattgaccgaagaggtagttagaataagacgatcacgtgaagcaaatcaa
gaagctgttctgcttgctctctgtttgaagaccttcaaggaaagagtaatcatttttagt
gggacaaagcattctgctcacaggttaaaaataatgtttggtctatctgggatgaaagct
gctgaacttcatggcaaccttacacaggctcagcggcttgaggcattagaacaattcaaa
aaacaagaggcggatatcctgattgcaactgatattgcagctcgtggtattgatattgtt
ggtgttcgaacagtaataaattttgcctgcccacgtgacgtcacaacttatcttcatcgt
gttggtcgtaccgctcgagcaggcagggagggctatgccgtgacatttgttaccgatgat
gatagatccctcttgaaagctatcgcaaagaaagctggttcacagctaaaaagccgcatt
gttgcagagaaacctgtggctgactgtgcaaaattaatcgagcaactggaacatcaaatt
tctaacataattctagaagaaagggaggaaatggcattacggaaagctgaaatggaagca
acaaaggcagaaaatatgatagctcacaaggatgagatatactcacgcccaaagagaacc
tggtttgctactgaaaaggaaaagaagactttggcaaaggctgctaaagaatccatgggt
caagttaaaagtggttccggagttgttagcgctcagcaagccgaagatcttcgtctgaag
gagaaaaggagaagagagcgtgagaaaaatctacctaggaagaaacgccgaaaattagag
gcacaacgggagatgctggaggacgacagggcagatgaggaggaagctcaggaaagcgaa
ggagggaagaaagcaaagaatagccaatctgtagttgatgtggcttatcgtagggcaaaa
tcaatgaaggctacgggcaaaaagggtattgttgctgtcaaaggaaagaatgagaaaaag
gcaaaacaaccttctgacaaggggcagactaggcaagaggaaatgcacgaactgttccag
aatgatatgagtgaatggaaacagggccgcgccttgaagaaaaaggacagctcttttgca
aagaaatccaagaactcttttaagagcaaatcaaggtacaagcggcgaaagtag
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