Lolium rigidum (rigid ryegrass): 124658990
Help
Entry
124658990 CDS
T09103
Name
(RefSeq) uncharacterized protein LOC124658990 isoform X1
KO
K06100
symplekin
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124658990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124658990
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124658990
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124658990
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124658990
U7-dependent histone pre-mRNA processing factors
124658990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
124658990
NCBI-ProteinID:
XP_047052922
LinkDB
All DBs
Position
6:132849368..132867808
Genome browser
AA seq
1282 aa
AA seq
DB search
MEFQADGARWPEPRGGSAEAPPPPLEAPSPRFDSSRALRLLRELGRNVTEDLVVLMPNLL
SFLKHDDPAVVKQSIASGTNLFAAVLEEMALQINGRGRVDAWLEEMWAWMNQFKDAVCVM
MHEPGPIAFKLLAVKFIETWILCLTPQPNSDRIQPIEGNNRRFDPSRLAKFHTSLDPVIL
EANANRAFILLVDILKSAYAHRGSFLVGTINSLAAIGKNRPVYYDRVLSVLFGFDPSLQT
SKGAHSASLRYSLKTAFLGFLRSPCQEMLDSKDILVRRLRALSPGEATEQIIRQVEKLSR
NIERASRMNKDEPPPWEMPYGDVSRKNPAPAMAEGIAKRARFDGSACLNPLIQGTPDYSD
VKIENDANMGHSSDPTILSTDVSPVEKMIEMIGALLAEGERGAESLGILISSVESDVMAD
IVIETMKHLPEAPFPLATNKIEPQSNLQSSSSPPTENFPGHTHSLPFTAQLAPSADGVGI
SPPDALLGPGSTDSKRDPRRDPRRLDPRRTVAPATASAIQVKVETTSMHQTNTLSDIPSV
PGKGEKCAEYSGDPPKSEDEEHPSSHPNNQVIVEENSEFLDDATEPETIFELHAPVEAGF
PSDVNEEMDNPLSPEAISNNESDSMDLEVDPFSPVPKTSTPEDTTHELPLLPSHLDLSDS
EKITLHILAVRRIIDDYKKNSLDTRFSLLAHLVAQSTADDNIMDLIQRHIIFHYHDQKGH
ELAMHVLYQLQCVNIADAPESSTSTSEHYEKFFISLAKSLIDSLPASDKSFSKLLCDAPC
LPEPLFRLLEGLCMSQGNNQQIKDSEGDRVAQGLGTVWSLILGRPPLRQACLDIVLKCAI
HSQDEVRGKAVRLVVKKLCDLTYASEKVEQFATDSLLAIANKHGGETDANFTTSKESTAE
QVEVGIQETSVSGSQVPDAGPCESGSTKASLISPKQSAVSEAKRYTSLFFALCTKRPILL
RQLFNIYGGSPKVVKQCIHWHIPTLVRNLGSSCPEMLDIIHNPPEGSEELVSLILQTLTE
ESNPSPNLVVAVKHLYETKLKDASILIPLLSSFPKEEVLPIFPRLVDLPPARFQDALARI
LQGSAHTGPALTPAEALIAIHEINPEKDKVPLKKVIDACTACFEQRTVFTQQVLEKSLNK
LVDNVPIPLLFMRTLIQALDAFPALVDFVMGILSRLVNKQIWKMPKLWVGFLKLAYQTQP
RSFDVLLQLPTPQLEIALNKYPNLRPHLSSFVNQRNLHNILPRHTLNVLGFINEPQQAPM
PFAPAAMQTADTTSSLPGTSLM
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atggaattccaggcggacggcgcccggtggccggagccgcggggcggctccgccgaggcg
ccgccgccgccgctcgaggccccctctcctcgcttcgattcgtcgcgtgccctaagattg
ctgagagagcttggcagaaatgtaacagaagatttggttgtgctgatgccaaacttgctg
tcatttttgaaacacgatgatcctgcagttgttaagcaatccatagctagtgggacaaat
ttatttgctgctgtactggaagagatggcacttcagattaacgggcgtggaagagttgat
gcttggcttgaagagatgtgggcttggatgaaccagttcaaggatgcagtatgtgttatg
atgcatgagcctggtcctattgcatttaaactactcgccgtaaagttcattgaaacatgg
atattgtgcctcacacctcaacccaacagtgaccgaatacagccaattgaaggaaacaac
cggaggtttgatccgtcacgattagctaaatttcatactagccttgatcccgttattctt
gaagccaatgcaaatagggctttcatcctccttgtggatattttgaaatcagcgtatgct
caccgaggatccttcctagttggcaccattaattctcttgcagctattggaaagaatagg
ccggtttattatgaccgtgttctgtcagtgttgtttgggtttgaccctagtttgcagact
tcaaaaggagctcattctgcaagcctgagatattccctgaaaacagcctttttagggttt
ctacggagtccttgccaagaaatgcttgattcgaaggacatactagtaaggcggctccga
gctctcagcccaggtgaagcaacagaacagattattaggcaggtagagaagctgtctaga
aatatagagcgggcttctcgtatgaacaaggatgaacctccaccatgggagatgccttat
ggagatgttagtcgaaagaatcctgctcctgctatggccgagggaatagctaagagagca
agatttgatggctctgcatgtttgaatccgctaatccagggaacacctgattattcagat
gtgaagattgaaaatgatgcaaatatgggtcattcctctgaccctactatcttgagtact
gatgtatctcctgttgagaagatgattgaaatgataggcgctttacttgctgaaggggaa
agaggagctgaatcccttggtattctcatctcatcggtagagtcagacgtcatggctgac
attgtaattgaaacaatgaagcatctaccagaagcaccatttccattagctacaaataag
attgaaccgcaatcaaatttgcaatcttcctccagcccccctacagagaactttccaggc
catacacactctttgccctttacagcacaattagcaccatctgcagatggagtaggcatt
tcaccacctgatgcccttctcggtcctggttctactgattcgaagcgtgacccaagaaga
gatcctcgtcgccttgatccacggcgaacagttgcacctgctactgctagtgccatacag
gtgaaggtggaaaccactagcatgcatcagacaaatactttgtcagatataccttctgtt
cctgggaagggtgaaaaatgtgcagaatattcaggagacccacctaaaagtgaagatgag
gagcatccatcttctcatcctaataatcaagtaattgtcgaagagaactctgagtttttg
gatgatgccacagaaccagagacaatttttgaattgcacgcaccagtggaagccggattt
ccttctgatgtcaatgaagagatggacaatccattgtcaccagaagctatttcaaacaat
gaatctgatagtatggatttggaggttgatcccttttcaccagtccccaagacatcaaca
ccagaggatactactcatgagttgccacttcttccatctcatttggatttgagtgacagt
gagaagatcacattgcatatattagctgttaggcggataattgatgattacaagaaaaat
agcctggatacaagattttctttgcttgctcatttggttgctcagagtactgctgatgat
aatatcatggatttgattcagaggcacattatcttccattatcatgaccagaagggtcac
gaactggctatgcatgtgttgtatcagctgcagtgtgtcaatattgctgacgcaccagaa
agttccacatctacttctgaacattacgagaagttctttatatcacttgcgaagtccttg
attgattcgttacccgcctcagataaatcttttagtaaacttctgtgtgatgccccatgt
ttgcctgagcctctgtttagattacttgagggtctttgtatgtcacaaggcaacaaccaa
caaataaaggacagcgagggtgaccgtgttgcccaaggcctcggaacagtatggagtctt
attttagggcggcctccacttcgtcaagcttgcttggatattgttctgaagtgtgccatt
cactctcaagatgaagtccgaggaaaagcggttagattggttgtcaaaaagctctgtgat
ctgacatatgcatcagaaaaagtcgagcagtttgccacagatagtcttctggcaattgct
aataagcatggcggggagacagatgctaatttcacaacctcaaaagaatctacagccgag
caggttgaagtaggcatccaggaaacttcagttagtggctcccaggttcccgatgctgga
ccttgtgaaagtggatctaccaaggcctcgttgatttcacctaaacaatcagcagtatct
gaggccaaacgctatacttcattgttttttgcactttgcacaaagagacccattcttctt
cgacagttgttcaatatctatggagggtctccaaaagttgtgaaacagtgtatccattgg
catatacccacccttgtaagaaatctgggatcctcatgtcctgaaatgctggacattatt
cataatccacctgaaggcagtgaagaacttgttagcctgatacttcaaacactgaccgaa
gaatcaaatccttcacccaacctggttgtggctgttaaacatctgtatgagaccaagctg
aaggatgcatctattctcattccattgctatcctcatttccgaaggaagaggtgctaccc
atatttcctagactagttgatctcccacctgccagattccaagatgcacttgctcggata
ttgcagggatctgctcatactggtccagcgttaacccctgcggaagctctgattgcaatc
catgaaattaatccagaaaaggacaaagttcccctaaagaaggtcatagatgcttgcact
gcttgctttgagcagcgcacggtatttactcagcaagttctggagaagtcattgaataaa
ttggttgataatgttccgattcctcttctttttatgaggactcttattcaagcacttgat
gctttcccagctttggttgattttgtcatgggaatactttccaggcttgtcaataagcag
atctggaaaatgccaaagctgtgggttggattcttaaaattggcataccagactcaacca
cgctcgtttgatgttttgttacagttacctacgccgcagcttgaaattgcactgaataag
tatccgaatcttcgaccacatctttcttcctttgttaatcagcggaacttgcacaacatc
ttgcccagacatactttgaatgtcttgggattcatcaatgaaccacagcaggcaccaatg
ccatttgcacctgctgcgatgcaaacagcagacacaacttcctctcttcctggtacaagc
ctaatgtga
DBGET
integrated database retrieval system
