Lolium rigidum (rigid ryegrass): 124659209
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Entry
124659209 CDS
T09103
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124659209
09123 Folding, sorting and degradation
03018 RNA degradation
124659209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124659209
03041 Spliceosome [BR:
lrd03041
]
124659209
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124659209
mRNA cycle factors
Stress granule specific factors
124659209
Spliceosome [BR:
lrd03041
]
Complex C
Other components
Complex C specific factors
124659209
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_7
TEX47
DUF7959
Motif
Other DBs
NCBI-GeneID:
124659209
NCBI-ProteinID:
XP_047053098
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Position
1:complement(279362797..279367429)
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AA seq
566 aa
AA seq
DB search
MASHPLLVPIMTPSPLRVAEPAVGSTASLYVGDLEKGVTEGQLYSIFSQVAPVVSLRVCR
DIAGRSLGYGYVNFNLREDANRALEYLNFTPINGNSIRVMFSNRDPTLRRNGMANVFIKN
LEVNIDNKGLNDMFSSFGTILSSKVATYLNGQSKGYGFVQFTNEKSAMDAINGLNGTVAN
GKQIFVSLFIRRQERQNVQVGMFTNVYIKNFPKEFTDDNLRQEFAPFGEITSVLVMRDAD
GSSRCFGFVNYKRSECAIEAIKNLNGKMVNDLIMYVGRAQKKEERQAELKAKFERERNEK
FKQLEGLNLYMKNLDDSIGDVHLRNLFENFGEIGSCKVMVDSHGRSKGYGFVSFKTVESV
HKAINEMNGKLFGRKRLYICVAQRKEERRAILQMVHPILNQDVTYMNGAATAAMVPLRLS
TSIVAHGFTQADITVPSPYNANNNNALASVDAEKQHEILGEKLYSLVEQVEPEFAAKVTG
MLLELEKTEVLHLIESASDLRVKISQAIEALQQRKVEEFGDAADLASALSSSNASHDTTD
LDSAPSSSSVSDDSAELASAPLSSNA
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggcaagccatccgctcctggtcccgatcatgacgccgtctcctctacgtgtggccgag
ccggcggtaggctcgacagcctccctgtacgtgggtgaccttgagaagggtgtcacggag
gggcagctatactccatcttcagccaggtcgcgcccgtggtttctctccgcgtctgccgc
gacatcgccggcaggtcattgggttacggttacgtcaatttcaacttgcgggaggacgcc
aatcgtgcattggaatatttaaattttacgcctatcaatggaaattctatccgggttatg
ttctcaaatagggacccaacactacgaagaaatggaatggcaaatgtgttcatcaaaaat
cttgaggtaaacattgacaacaagggcttgaacgacatgttttctagctttggcaccatt
ctttcaagtaaagtggccacttatttaaatggtcaatcaaaaggatatggttttgttcaa
ttcacaaatgagaaatctgctatggatgccatcaacggtttgaatggcacggtggccaat
ggcaaacaaatttttgttagtctcttcatccggcgtcaagagaggcaaaacgttcaagtg
ggcatgtttacaaatgtgtacataaagaactttccgaaagaattcacggatgataactta
cgtcaagagtttgcaccatttggtgaaattactagtgttctagttatgagagatgctgat
gggagttctagatgttttggctttgttaactataagagatcagaatgcgccattgaagct
attaaaaatcttaatgggaagatggtcaatgatttgattatgtatgttggaagagctcag
aaaaaggaagaacggcaagctgagctgaaggccaagtttgagcgcgagagaaatgaaaaa
ttcaaacagcttgaaggactcaatttgtatatgaagaatctagatgatagtattggtgat
gtacatctgagaaacttatttgaaaactttggcgagatagggtcatgcaaggttatggta
gattcacacggaaggagcaagggttatggctttgtgtcatttaaaactgttgaatctgta
cacaaagctattaacgaaatgaatggaaagttgtttggaagaaaacggctgtacatttgt
gtggctcaacggaaggaggaaagaagagcaatactacagatggttcacccaattttgaat
caagacgtcacatacatgaatggagctgcaacggccgcgatggttcccctacgtctctcg
acttccattgtagcccatggcttcacacaagctgatattactgtcccttctccatataat
gcaaacaacaacaacgctctagcttctgttgatgcagagaaacaacatgagattctgggt
gagaagttgtactcgttggttgaacaagtggagcctgaatttgctgcaaaggtaactggg
atgctacttgagctggagaagactgaggtccttcatctgatagagtctgcgagtgatctc
cgggttaagatttcacaagcaatagaagctctgcaacaaaggaaagtagaagaattcggt
gatgctgctgaccttgcttccgcactgtcatcctcgaatgcttcacacgacactaccgac
ctcgattctgcaccgtcgtcctcgagtgtttctgacgactctgctgaactcgcttccgcg
cctttgtcatccaatgcttga
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