Lolium rigidum (rigid ryegrass): 124659215
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Entry
124659215 CDS
T09103
Name
(RefSeq) probable polygalacturonase At1g80170
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd00040
Pentose and glucuronate interconversions
lrd01100
Metabolic pathways
Module
lrd_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
124659215
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
124659215
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
124659215
NCBI-ProteinID:
XP_047053101
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Position
6:complement(321086997..321089001)
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AA seq
357 aa
AA seq
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MDFHAAGDGSTDDAKAFAATWNATCGDSSSPTMVIPGGRTFLLSQIRLNGPCKSPVTVQL
DGNIVAPNAIWTTTAANLLTFYRVNNLTVNGSGQMDGNGAIWWTCFNKKLLAFASCNNLS
VKNIHLKDSPDKHMTLFRCSQVQVNNVSVRAPGKSPNTDGITMAYSDHVYISNCSIKTGD
DCVSILSGTSDVNITNSACGPGHGISVGSLGGNNTTALVERITVSNCRFSKTLTGVRIKS
WQGGSGKANGFLFENLNMTDVQYPIDIDQFYCPPGNCPPQDSAVAISDARFINIHGTSSN
PKAIRILCSQSVQCRGIYLDNINLSCSRHTARTRATISNAYGTIAGTVKPHVQFLGA
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atggatttccatgctgctggagatggcagcacagatgatgcaaaggcattcgcggcgaca
tggaacgcaacttgcggtgacagcagctcgccgaccatggtcatccctggaggaaggacg
ttcttgttaagccagatcaggttgaatggaccctgcaagtcgcctgtcaccgtgcagctg
gacgggaacatcgtggcgccaaacgccatctggacgacgacagcagcgaacctccttacc
ttctaccgcgtcaacaacctgacggtgaatgggagtggccagatggacggcaatggcgcc
atatggtggacttgcttcaacaagaagctgctggcattcgcaagctgcaacaacctatcc
gtgaagaacatacacctgaaggacagccctgacaagcacatgaccttgttccggtgcagc
caggtgcaggtgaacaacgtctccgtcagggcgccaggcaaaagccctaacacggacggg
atcaccatggcctactccgaccacgtttatatctcgaattgctctatcaaaaccggtgat
gactgcgtgtcgattctatcagggaccagtgatgttaatatcaccaacagcgcgtgtggg
cctggtcatggcatcagtgtgggaagccttggaggcaacaatacgacagcacttgtggaa
aggattacagtatccaactgcagattttctaaaactttgactggtgttaggatcaaatcg
tggcagggtggcagtggcaaagcaaatggtttcctttttgagaacctcaacatgactgat
gtccaatatcctattgatattgaccagttctattgtcccccgggaaattgtccgccacag
gatagcgctgtggccatatctgacgccaggttcatcaacatccacgggacatcctccaac
cccaaagccatccggattctgtgcagccagagtgtgcagtgtcgcggcatctatcttgac
aacattaacctctcctgctctcggcataccgcccgaacacgagccactatttcaaatgcc
tacggaaccattgcgggcacggtgaaaccacatgtacagttcctaggcgcttga
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