Lolium rigidum (rigid ryegrass): 124659473
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Entry
124659473 CDS
T09103
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124659473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124659473
03012 Translation factors [BR:
lrd03012
]
124659473
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124659473
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124659473
Translation factors [BR:
lrd03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124659473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
DEAD
R3H
OB_NTP_bind
HA2_N
Ank_5
AAA_22
nSTAND3
AAA_19
Ank_2
ATPase
ResIII
Rad17
AAA_16
AAA_23
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
124659473
NCBI-ProteinID:
XP_047053295
LinkDB
All DBs
Position
6:complement(97405116..97414079)
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AA seq
1147 aa
AA seq
DB search
MMRFRAVLRKFRASGEEVYKFDASLSKAERGAIHQMCRKMGLKTKSTGNGDARRLGIYKY
QRKNNKSTQEPAEGPSRLGFSKEATQVLLDLFTHYPPDEAELNGDAVKKSGKKAARIPWK
RDGAFRRPTMSGRDIAKKVEMLTSNTSGQLRKIAEDRSKLPISSFKDHICSTLENHQVVL
ISGETGCGKTTQVPQYILDYVWGKGESCKIICTQPRRISATSVAERISAERGEAVGNTVG
YKIRLESKGGKNSSIMFCTNGVLLRLLIGRVTNVQTAQNVTHSFDDPIMEITHIIVDEIH
ERDRYSDFMLAILRDLLPMYPHLHIVLMSATINADRFSQYFNGCPVIEVPGHTYPVKTFY
LEDVLSILQSVDDNHLHPASDDLELKTVLTDEYKSSLDEVISMALVNDEFDPLIELISVE
QNPEVFNYSHSETGVTPLMVFAGKGQLGDVCMLLSFGVDCSARDHDGKSALDWSQQENQK
EVYEVIKKHMDCTPAKSPEENDLLNKYLATINPEHIDTVLIERLLKKLCADSSEGAVLIF
LPGWEAINKTRERLLASSIFQDSSKFHVLSLHSMIPSSEQRKVFQRPPAGVRKIILSTNI
AETAVTIDDVVFVIDSGRMKEKSYDPYNSVSTLQTSWVSRASARQREGRAGRCQPGTCYH
LYSRLRAASLQEYQTPEINRMPIEELCLQVKLLDPNCRIADFLKKTLDPPVSETVKNAIT
VLQDLGALTQDEQLTDLGEKLGSLPVHPSTSKMLLFAILMNCLDPALTLACAVDYRDPFV
LPVDPDQRKRADAAKIELASLYGGFSDQLAVVAAFDCWRCAKDTGQKALFCSQYFVNSNT
MTMLSSMRKQLQNELAQRGFLPAEASACNLNAKASGIISAVLMAGAYPMVGKLLPPCKNA
RSTVVETASGAKVRLHPSSANYNLSLNKSSGYPLVIYDEITRGDGGTLSIKKCSVVGSYP
LLLLASEMAVAPPDGDNDEEEGSSGDEVIMSSPDNTVSVVVDRWLRFHATALDVAQMYCL
RERLVSAILFKVQHPQDVLPPALGATMYAIACILTYDGLPAMVQCNTGAFDSRPAERRGG
GYIRPNDFLTSLLTDRVAPLAEYLSPENILPPSDGGRYSLPSKTVPGPSAPQSSKRQRDS
ARRQRPQ
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgcttcagggcagtgctcaggaagttccgggcctccggcgaagaggtgtacaaa
ttcgatgctagtctatccaaggcagagcgtggcgcaatccatcaaatgtgtagaaagatg
ggcttgaaaacgaaaagtaccgggaatggggatgctcgacgccttgggatttacaaatac
caacgtaaaaataataaatccacacaggagcctgcagaaggccctagcagacttggattt
tctaaagaagcaacacaggttttgcttgatttatttacgcattatcctcctgatgaagct
gaattaaatggtgatgccgtcaagaaatctggcaagaaggctgcaagaattccatggaaa
agagatggtgcctttcgcaggccaactatgagcggacgtgatatagcaaagaaggttgag
atgcttacatctaacacaagtggacagctgaggaagatcgctgaagacagatccaaactt
ccgatatcatccttcaaggatcacatttgttctactctggaaaaccaccaggtggttctt
atttctggagaaacaggctgcggtaaaactacccaggttcctcaatatatcttggattat
gtgtggggcaagggtgaatcatgtaagatcatatgtactcagccgcgacggatatcagct
acttcagttgccgaacgaatatctgctgaaagaggagaggctgttggtaacacagttggg
tacaagatacgtttggagtcaaaaggagggaagaattcgtcaatcatgttctgtactaat
ggtgttcttttgaggctgttgataggcagagtaactaacgttcaaacagcacaaaatgtg
acacactcatttgatgatccaattatggagataacacacatcattgtggatgaaatccat
gaaagggataggtattccgatttcatgttagctatcctgagagatttgctgccgatgtat
ccgcatcttcatatagtgctcatgagtgcaacaatcaacgctgaccgtttttctcagtat
ttcaacggatgcccggttattgaagtccctggccatacctaccctgttaaaactttctat
ttggaggatgtgctttctattctgcaatctgtagatgataatcatcttcatcccgcatca
gatgatctggagctgaagactgtgttaaccgatgagtacaaaagctcactggatgaagta
attagtatggctttggtcaatgatgaatttgatcctctcattgagcttatttctgtagag
cagaacccagaagtcttcaactactcacattcagaaactggtgtgacacctttgatggtt
tttgctggaaaaggtcaacttggggatgtctgcatgcttctatcatttggtgtggattgt
tctgcacgtgatcacgatggaaaatctgcattagattggtctcagcaagagaatcagaaa
gaggtttatgaagtaataaaaaaacacatggattgtactccagcaaaatcacctgaagag
aatgatcttcttaataaatacttagcaactatcaatccagagcacatagatactgtgctg
atagaacgcttgcttaaaaagttatgtgctgattcaagtgaaggagctgtattgatcttc
cttcctggttgggaagctataaataaaacaagagagaggttacttgcttcttccatcttt
caggattcatcaaaattccatgtgctgtctctccattccatgatcccatcttcagagcag
agaaaggttttccaacgtccacctgctggggttcgtaaaattattctctcaacgaacata
gcggagactgcagtaacaattgatgatgttgtatttgtcatagatagtggaagaatgaaa
gagaaaagttatgatccgtataatagtgtgtccacgcttcaaacttcctgggtttctcga
gctagtgcaaggcagcgtgaagggcgtgctggtcgttgtcagccaggaacttgctaccat
ctttactctagattgcgagcagcttcactgcaagaataccaaactcctgaaattaatagg
atgccaattgaagaactatgtttgcaggtcaaactgcttgatccaaactgcagaatagca
gactttctaaagaagaccttggatcctccagtttctgagactgtaaaaaatgctattact
gtgcttcaggatcttggtgctttaacacaagatgaacagttgacagatttgggtgaaaag
ttaggttctcttccggttcatccatccacaagcaagatgctcctgtttgctatattgatg
aactgccttgatcctgcattgacattggcatgtgcagtagattatagagatcctttcgtc
cttccagtcgatccagatcagagaaaaagagccgatgcagccaaaatcgagcttgcttca
ttatatggtggatttagcgaccagcttgctgttgtggcagcatttgattgttggagatgt
gctaaagacacgggccaaaaagctttgttttgttcacaatattttgtcaattcaaacacc
atgactatgttgtcaagtatgcgaaaacagcttcagaatgaactagctcaaagaggattt
cttcctgctgaagcatctgcctgcaacttaaatgctaaagcttcaggtatcattagcgca
gtccttatggctggcgcttaccccatggttggaaagctgcttcctccttgcaaaaatgcc
aggagtacagttgtggaaacagcaagtggtgccaaagttcgattgcatccgtcttctgca
aactataacttgtcattaaataaatcttctggatatccgctagtcatatatgatgaaatt
actcgaggtgatggtgggacgttgtctataaagaaatgttctgtcgttgggtcatatcca
ctacttctgcttgcttccgaaatggctgttgctccacctgatggtgataatgatgaagag
gaaggttccagtggggatgaagtgattatgtcttctcctgataacactgtttcagttgtt
gttgaccgctggctcagatttcatgcgacagctcttgatgttgctcaaatgtactgccta
agagaacgtctagtatctgctatacttttcaaagtccaacacccgcaggatgttctccca
cctgctcttggagcaacgatgtatgccattgcatgtatcttgacatatgatggcttgcct
gctatggttcaatgtaacaccggtgcttttgattcgaggccagcagaaaggagaggtggt
ggttatattcgtcctaatgatttccttacgtcattgctaacggacagagtcgcaccactt
gccgagtatctttctccggagaatattctgcccccgagtgatggtggtagatatagtcta
cccagcaaaactgtaccagggccttcagcaccacaatcttccaaaaggcagcgtgacagc
gctcggcgccagaggcctcaatag
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