Lolium rigidum (rigid ryegrass): 124659690
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Entry
124659690 CDS
T09103
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124659690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124659690
03012 Translation factors [BR:
lrd03012
]
124659690
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124659690
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124659690
Translation factors [BR:
lrd03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124659690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
DEAD
OB_NTP_bind
R3H
HA2_N
Ank_5
nSTAND3
AAA_22
AAA_19
Ank_2
ATPase
ResIII
Rad17
AAA_16
AAA_23
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
124659690
NCBI-ProteinID:
XP_047053472
LinkDB
All DBs
Position
6:102721137..102729666
Genome browser
AA seq
1170 aa
AA seq
DB search
MGRKKPNDGGAGGGGNPPLPVPKEKMMRFRAVLRDFKASHEQVYKFDASLSKEERGAIHF
MCRKMGLKTKSTGNENVRRLSVYKRNNKKDTQGPAEGPSRLGFSKEATQVLLDLFTHYPP
DEAELNGDAVKKSGKKAARIPWKRDGAFRRPTMSGRDIAKKVEMLTSNTSGQLRKIAEDR
SKLPISSFKDHICSTLENHQVVLISGETGCGKTTQVPQYILDYVWGKGESCKIICTQPRR
ISATSVAERISAERGEAVGNTVGYKIRLESKGGKNSSIMFCTNGVLLRLLIGRVTNVQTA
QNVTHSFDDPIMEITHIIVDEIHERDRYSDFMLAILRDLLPMYPHLHIVLMSATINADRF
SQYFNGCPVIEVPGHTYPVKTFYLEDVLSILQSVDDNHLHPASDDLELKTVLTDEYKSSL
DEVISMALVNDEFDPLIELISVEQNPEVFNYSHSETGVTPLMVFAGKGQLGDVCMLLSFG
VDCSARDHDGKSALDWSQQENQKEVYEVIKKHMDCTPAKSPEENDLLNKYLATISPEHID
TVLIERLLKKLCADSSEGAVLIFLPGWEAINKTRERLLASSIFRDSSKFHVLSLHSMIPS
SEQRKVFQRPPAGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNSVSTLQTSW
VSRASARQREGRAGRCQPGTCYHLYSRLRAASLQEYQTPEINRMPIEELCLQVKLLDPNC
RIADFLKKTLDPPVSETVKNAITVLQDLGALTQDEQLTDLGEKLGSLPVHPSTSKMLLFA
ILMNCLDPALTLACAVDYRDPFVLPVDPDQRKRADAAKIELASLYGGFSDQLAVVAAFDC
WRCAKDTGQKALFCSQYFVNSNTMTMLSSMRKQLQNELAQRGFLPAEASACNLNAKASGI
ISAVLMAGAYPMVGKLLPPCKNARNTVVETASGAKVRLHPSSANYNLSLNKSSGYPLVIY
DEITRGDGGTLSIKKCSVVGSYPLLLLASEMAVAPPDGDNDEEEGSSGDEVIMSSPDNTV
SVVVDRWLRFHATALDVAQMYCLRERLVSAILFKVQHPQDVLPPALGATMYAIACILTYD
GLPAMVQCNTGAFDSRPAERRGGGYIRPNDFLTSLLTDRVAPLAEYLSPENILPPSAGGR
YSLPSKTVPGPSAPQSSKRQRDSARRRRPQ
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggggcggaagaagcccaacgacggaggagccgggggcggcggcaatcctccactcccc
gtgcccaaggagaagatgatgcgcttcagggcagtgctcagggacttcaaggcctcccac
gaacaggtatacaaattcgatgctagtctatccaaggaagagcgtggcgcaatccatttt
atgtgtagaaagatgggcttgaaaacgaaaagtaccgggaatgagaatgttcgacgcctt
agtgtttacaaacgtaacaataagaaagacacacaggggcctgcagaaggccctagcaga
cttggattttctaaagaagcaacacaggttttgctagatttatttacgcattatcctcct
gatgaagctgaattaaatggtgatgccgtcaagaaatctggcaagaaggctgcaagaatt
ccatggaaaagagatggtgcctttcgcaggccaactatgagcggacgtgatatagcaaag
aaggttgagatgcttacatctaacacaagtggacagctgaggaagattgctgaagacaga
tccaaacttccgatatcatccttcaaggatcacatttgttctactctggaaaaccaccag
gtggttcttatttctggagaaacaggctgcggtaaaactacccaggttcctcaatatatc
ttggattatgtgtggggcaagggtgaatcatgtaagatcatatgtactcagccgcgacgg
atatcagctacttcagttgccgaacgaatatctgctgaaagaggagaggctgttggtaac
acagttgggtacaagatacgtttggagtcaaaaggagggaagaattcgtcaatcatgttc
tgtactaatggtgttcttttgaggctgttgataggcagagtaactaacgttcaaacagca
caaaatgtgacacactcatttgatgatccaattatggagataacacacatcattgtggat
gaaatccatgaaagggataggtattccgatttcatgttagctatcctgagagatttgctg
ccgatgtatccgcatcttcatatagtgctcatgagtgcaacaatcaacgctgaccgtttt
tctcagtatttcaacggatgcccggttattgaagtccctggccatacctaccctgttaaa
actttctatttggaggatgtgctttctattctgcaatctgtagatgataatcatcttcat
cccgcatcagatgatctggagctgaagactgtgttaaccgatgagtacaaaagctcactg
gatgaagtaattagtatggctttggtcaatgatgaatttgatcctctcattgagcttatt
tctgtagagcagaacccagaagtcttcaactactcacattcagaaactggtgtgacacct
ttgatggtttttgctggaaaaggtcaacttggggatgtctgcatgcttctatcatttggt
gtggattgttctgcacgtgatcacgatggaaaatctgcattagattggtctcagcaagag
aatcagaaagaggtttatgaagtaataaaaaaacacatggattgtactccagcaaaatca
cctgaagagaatgatcttcttaataaatacttagcaactatcagtccagagcacatagat
actgtgctgatagaacgcttgcttaaaaagttatgtgctgattcaagtgaaggagctgta
ttgatcttccttcctggttgggaagctataaataaaacaagagagaggttacttgcttct
tccatctttcgggattcatcaaaattccatgtgctgtctctccattccatgatcccatct
tcagagcagagaaaggttttccaacgtccacctgctggggttcgtaaaattattctctca
acgaacatagcggagactgcagtaacaattgatgatgttgtatttgtcatagatagtgga
agaatgaaagagaaaagttatgatccgtataatagtgtgtccacgcttcaaacttcctgg
gtttctcgagctagtgcaaggcagcgtgaagggcgtgctggtcgttgtcagccaggaact
tgctaccatctttactctagattgcgagcagcttcactgcaagaataccaaactcctgaa
attaataggatgccaattgaagaactatgtttgcaggtcaaactgcttgatccaaactgc
agaatagcagactttctaaagaagaccttggatcctccagtttctgagactgtaaaaaat
gctattactgtgcttcaggatcttggtgctttaacacaagatgaacagttgacagatttg
ggtgaaaagttaggttctcttccggttcatccatccacaagcaagatgctcctgtttgct
atattgatgaactgccttgatcctgcattgacattggcatgtgcagtagattatagagat
cctttcgtccttccagtcgatccagatcagagaaaaagagccgatgcagccaaaatcgag
cttgcttcattatatggtggatttagcgaccagcttgctgttgtggcagcatttgattgt
tggagatgtgctaaagacacgggccaaaaagctttgttttgttcacaatattttgtcaat
tcaaacaccatgactatgttgtcaagtatgcgaaaacagcttcagaatgaactagctcaa
agaggatttcttcctgctgaagcatctgcctgcaacttaaatgctaaagcttcaggtatc
attagcgcagtccttatggctggcgcttaccccatggttggaaagctgcttcctccttgc
aaaaatgccaggaatacagttgtggaaacagcaagtggtgccaaagttcgattgcatccg
tcttctgcaaactataacttgtcattaaataaatcttctggatatccgctagtcatatat
gatgaaattactcgaggtgatggtgggacgttgtctataaagaaatgttctgtcgttggg
tcatatccactacttctgcttgcttccgaaatggctgttgctccacctgatggtgataat
gatgaagaggaaggttccagtggggatgaagtgattatgtcttctcctgataacactgtt
tcagttgttgttgaccgctggctcagatttcatgcgacagctcttgatgttgctcaaatg
tactgcctaagagaacgtctagtatctgctatacttttcaaagtccaacacccgcaggat
gttctcccacctgctcttggagcaacgatgtatgccattgcatgtatcttgacatatgat
ggcttgcctgctatggttcaatgtaacaccggtgcttttgattcaaggccagcagaaagg
agaggtggtggttatattcgacctaatgatttccttacgtcattgctaacggacagagtc
gcaccacttgctgagtatctttctccggagaatattctgcccccaagtgctggtggtaga
tatagtctacccagcaaaactgtaccagggccttcagcaccacaatcttccaaaaggcag
cgtgacagtgctcggcgccggaggcctcaatag
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