Lolium rigidum (rigid ryegrass): 124659854
Help
Entry
124659854 CDS
T09103
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124659854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124659854
03012 Translation factors [BR:
lrd03012
]
124659854
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124659854
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124659854
Translation factors [BR:
lrd03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124659854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_19
NACHT
PhoH
AAA_16
ATPase
NPHP3_N
ATPase_2
Motif
Other DBs
NCBI-GeneID:
124659854
NCBI-ProteinID:
XP_047053634
LinkDB
All DBs
Position
6:complement(277620274..277628453)
Genome browser
AA seq
1065 aa
AA seq
DB search
MLLRNDNEQEIMSRERKDRRDFDQLAQLAERMGLHSRQYARIIVFSKVPLPNYRSDLDDK
RPQREVSIPSGLQREVDALLADYLARKRTDSGNFPNAAFSRSSSTDSFMTDEGFYEQQDN
QASTNVVMERIQRKKSLQLRNQQAAWQESNDGQSMMEFRRSLPANKERQSLLEAISQNQV
VVVSGETGCGKTTQLPQYILESEIEAARGATCSIICTQPRRISAISVSERVAAERGEKIG
ESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLI
VLKDLLPRRPELRLVLMSATLNAEMFSSYFGGAPMIHIPGFTYPVRSRFLEDILEVTGHR
LTPYNQIDDYGQEKSWKMQKQALRKTKTQIASVVEDAVKTADLRDYSPQTRDSLSCWNPD
SIGFNLIENVLCHICQKERAGAVLVFMTGWDDINTLKEQLQSNPLLGDPSKVLLLACHGS
MASAEQKLIFDKPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLL
PTWISKASARQRRGRAGRVQSGECFHLYPQCVYNVFADYQLPELLRTPLQSLCLQIKSLR
LGSISEFLSRALQSPESLSVQNAIDYLKVIGAFDQNEELTVLGKHLSMLPVEPKLGKMLI
FGAIFNCLDPILTIVSGLSVRDPFMTPFDKKDLAESAKLQFSCREYSDHLAIVHAYDGWR
EAERDRNGYDYCWRNFLSAQTLKALDSLRRQFIFLLKDTGLIDENMTMCNKWSRDANLVR
AVICAGLYPGVSSVVNKEKSVSLKTMEDGQVMLYSSSVNGKEGKIPFPWLVFNEKVKVNS
VFLRDSTAISDSTLLLFGGNIQRGGLDGHLKMLGGYLEFFMSRDLASTYLNLKNELENLI
HHKLQNPRMDIQTSEELLSAVRLLVTEDPCSGRFVYGRQEPRSKKAKMMLAPASVSMDRG
GGHGGDNPKNQLQTLLTRAGNDNPTYKTKQIKNSLFRSTVEFNGMEFVGQPCANKKLAEK
DAAGEAINWLTGGGAPPDTRDPRDMDHMSMLTKPPRRKRHHHRRS
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgcttctccgaaacgacaatgagcaagagattatgtctagggaaagaaaggacaggcgc
gattttgatcagcttgcccaactggcagagcgaatgggtttgcacagccgtcagtatgct
cgaatcattgtgtttagtaaggtgcccttgcctaattatcgatcagaccttgatgacaaa
aggcctcaaagagaggtatctataccctctggcttgcaaagagaagttgatgcgttgctt
gcagactatcttgcacggaagagaacagacagtgggaactttcctaatgctgccttctca
aggtctagcagcacagacagttttatgactgatgaaggcttctatgagcagcaggataat
caggcatcaacaaatgttgtgatggagagaatccaaagaaagaaaagcttacagttgcgt
aaccagcaagctgcttggcaggaatcaaatgatggtcagagtatgatggagtttcgtcgc
agtcttcctgccaataaagaaaggcaatcactactggaagctatatctcagaatcaggtg
gttgtagtttctggtgaaactggctgtggtaagacaacgcagctgccacaatatatttta
gagtctgaaatagaggctgctcgcggtgctacttgcagtatcatttgcactcaaccaaga
cgaatatcagctatttctgtttctgaaagagttgctgctgaaagaggtgaaaaaattggg
gaatcggttggctacaaagttcggttggaaggaatgagaggaagggatacacgccttctg
ttctgcactactggagtcctgttgcggcgattgctggtagatagaaacttgaaaggtgtt
acccatgttattgtggatgaaatccatgaacggggcatgaatgaagattttctccttatt
gtcctaaaggatcttcttccacgccggcccgagctaagacttgtattgatgagtgcaacc
ctcaatgctgagatgttctcttcatactttggcggagcacccatgatacatatacctggt
tttacataccctgttcgaagtcgttttctagaagatatccttgaagttaccgggcacaga
ttgaccccgtacaatcagattgatgactatggccaagagaaaagttggaaaatgcaaaag
caagctctgaggaagacgaagacccaaattgcttctgttgtggaagatgcagttaaaact
gctgatttaagggattatagtccgcagactcgtgactcgctatcctgctggaatcctgat
tcaattggttttaacttaatagaaaatgtattgtgccatatttgtcaaaaggaaagagct
ggtgctgttcttgtgtttatgactggttgggatgacattaatacactgaaagagcagctg
caatcaaacccattacttggtgaccctagcaaagttttgcttcttgcatgtcatggttca
atggctagcgcagagcagaaactaatattcgataaacctgagcctggtgtaaggaaaata
gttcttgctaccaatttggctgaaactagtattactatcaatgacgtagtctttgttgtt
gattgtggaaaagcaaaggagacatcttatgatgcattgaataacacaccctgtttgctt
cccacctggatctccaaggcttctgccagacaaagacgaggaagagctggccgagttcag
tcaggggagtgtttccatctttatccacagtgcgtatataatgtgtttgctgactaccag
ttgccagaacttctgagaacccctctccaatccctatgcttgcaaataaaaagcttgcgg
cttgggagcatctcagaatttttatccagagctttgcaatcacccgagtctctatcggta
caaaatgccattgattatctcaaagtcattggagcatttgatcagaatgaagagttaaca
gttctaggaaagcacttgtctatgcttccagtagagcctaaattgggcaagatgcttatt
tttggggctatttttaactgccttgatcccatattaacaatagtttctggacttagtgtt
agagatccattcatgacaccatttgacaagaaggatcttgcggagtctgccaagttacag
ttttcatgtcgtgagtatagcgatcaccttgcgattgttcatgcatatgatggatggaga
gaagctgaaagagatcgcaatggctatgactactgctggagaaattttctgtctgcacaa
accttgaaagccctagattctctccggaggcagttcatctttcttttgaaggacactggt
ctgattgatgaaaacatgactatgtgcaacaaatggagtcgtgatgcaaatctagttagg
gcagtcatttgtgcgggactatacccaggtgtttcgtctgttgtgaacaaggagaaatca
gtttctctgaagacaatggaggatggacaggtcatgctttactcgagttcagtcaatggc
aaagaaggcaagattccattcccctggctagtgttcaatgagaaagtgaaggtgaattca
gtgtttctccgggattcaacagcaatatctgactctacattgttgctctttggaggaaac
attcaacgagggggcttggatggacacttgaaaatgcttggaggctatctggagttcttt
atgagccgtgatctcgcatcaacttacttgaatctcaagaatgaactcgagaatttaatc
catcacaagcttcaaaacccaaggatggacatccaaaccagtgaggagcttctgtctgct
gtacggttgctggtcacggaggacccgtgcagtggtcggtttgtctatggccgacaagaa
ccaagatcaaagaaagcgaagatgatgctcgcgccagcctcagtctccatggaccgtgga
ggtggacacggaggggacaaccctaagaaccagctccagactcttctaacaagggctgga
aacgacaacccaacctacaagacaaagcagatcaagaacagcctcttcaggtcgacagtc
gagttcaacggcatggagtttgtagggcagccatgcgcaaacaagaagctcgcggagaag
gacgcggcgggagaggcgatcaactggctcacgggtggaggagctccccctgacacgaga
gacccacgggacatggatcacatgtccatgctgacgaaaccgccacgcaggaagaggcac
caccataggaggtcctga
DBGET
integrated database retrieval system
