Lolium rigidum (rigid ryegrass): 124659974
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Entry
124659974 CDS
T09103
Name
(RefSeq) uncharacterized protein LOC124659974
KO
K06100
symplekin
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124659974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124659974
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124659974
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124659974
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124659974
U7-dependent histone pre-mRNA processing factors
124659974
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
124659974
NCBI-ProteinID:
XP_047053735
LinkDB
All DBs
Position
6:135503851..135522480
Genome browser
AA seq
1280 aa
AA seq
DB search
MEFQADGARWPEPRGGSAEAPPPALEAPSPRFDSSRALRLLRELGRNVTEDLVVLMPNLL
SFLKHDDPAVVKQSIASGTNLFAAVLEEMALQINGRGRVDAWLEEMWAWMNQFKDAVCVM
MHEPGPIAFKLLAVKFIETWILCLTPQPNSDRIQPIEGNNRRFDPSRLAKFHTSLDPVIL
EANANRAFILLVDILKSAYAHRGSFLVGTINSLAAIGKNRPVYYDRVLSVLFGFDPSLQT
SKGAHSASLRYSLKTAFLGFLRSPCQEMLDSKDILVRRLRALSPGEATEQIIRQVEKLSR
NIERASRMNKDEPPPWEMPYGDVSRKNPAPAMAEGIAKRARFDGSAFSNPLIQGTPDYSD
VKIENDANMGHSSDPTILSTDVSPVEKMIEMIGALLAEGERGAESLGILISSVESDVMAD
IVIETMKHLPEAPFPLATNKSEPQSNLQSSSSPPTENFPGHTHSLPFTAQLAPPADGVGI
SPPDALLGPGSTDSKRDPRRDPRRLDPRRTVAPATASAIQVKVETTSMHQTNTLSDIPSV
PGKGEKCAEYSVDPPKSEDEEHPSFHPNNQVIVKENEFLDDATEPEAIFELHAPVEAGIP
SDVNEEMDNPLSPEAISNNESDSMDLEVDPFSPVPKISTPEDTTHELPLLPSHLDLSDSE
KITLHILAVRRIIDDYKKNTLDTRFSLLAHLVAQSSADDNIMDLIQRHIIFHYHDQKGHE
LAMHVLYQLQCVNIADAPESSTSTSEHYEKFFISLAKSLIDSLPASDKSFSKLLCDAPCL
PESLFRLLEGLCMSQGNNQQIKDSEGDRVAQGLGTVWSLILGRPPLRQACLDIVLKCAIH
SQDEVRGKAVRLVVKKLCDLTYASEKVEQFATDSLLAIANKHGVETDANFTTSKESTAEV
EIGIQEASVSGSQVPDAGPSESGSTKASLISPKQSAVSEAKRYTSLFFALCTKRPILLRQ
LFNVYGGSPKVVKQCIHWHIPTLVRNLGSSCPEMLDIIHNPPEGSEELVSLILQTLTEES
NPSPNLVVAVKHLYETKLKDASILIPLLSSFPKEEVLPIFPRLVDLPPARFQDALARILQ
GSAHTGPALTPAEALIAIHEINPEKDKVPLKKVIDACTACFEQRTVFTQQVLEKSLNKLV
DNVPIPLLFMRTVIQALDAFPALVDFVMGILSRLVNKQIWKMPKLWVGFLKLAYQTQPRS
FDVLLQLPTPQLEIALNKYPNLRPHLSSFVNQRNLHNILPRHTLNVLGFINEPQQAPMPF
APAAMQTADTTSSLPGTTLM
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atggaattccaggcggacggcgcccggtggcccgagccgcggggcggctccgccgaggcg
ccgccgccggcgctggaggccccctctcctcgcttcgattcgtcgcgtgccctaagattg
ctgagagagcttggcagaaatgtaacagaagatttggttgtgctgatgccaaacttgctg
tcatttttgaaacacgatgatcctgcagttgttaagcaatccatagctagtgggacaaat
ttatttgctgctgtactggaagagatggcacttcagattaacgggcgtggaagagttgat
gcttggcttgaagagatgtgggcttggatgaaccagttcaaggatgcagtatgtgttatg
atgcatgagcctggtcctattgcatttaaactactcgccgtaaagttcattgaaacatgg
atattgtgccttacacctcaacccaacagtgaccgaatacagccaattgaaggaaacaac
cggaggtttgatccgtcacgattagctaaatttcatactagccttgatcccgttattctg
gaagccaatgcaaatagggctttcatcctcctggtggatattttgaaatcagcgtatgct
caccgaggatccttcctagttggcaccattaattctcttgcagctattggaaagaatagg
ccggtttattatgaccgtgttctgtcagtgttgtttgggtttgaccctagtttgcagact
tcaaaaggagctcattctgcaagcctgagatattccctgaaaacagcctttttagggttt
ctacggagtccttgccaagaaatgcttgattccaaggacatactagtgaggcggctccga
gctctcagcccaggtgaagcaacagaacagattattaggcaggtagagaagctgtctaga
aatatagagcgggcttctcgtatgaacaaggatgaacctccaccatgggagatgccttat
ggagatgttagtcgaaagaatcctgctcctgctatggccgagggaatagctaagagagca
agatttgatggctctgcattttcgaatccgctaatccagggaacacctgattattcagat
gtgaagattgaaaatgatgcaaatatgggtcattcctctgaccctactatcttgagtact
gatgtatctcctgttgagaagatgattgaaatgataggcgctttacttgctgaaggggaa
agaggagctgaatcccttggtattctcatctcatcggtagagtcagacgtcatggctgac
attgtaattgaaacaatgaagcatctaccagaagcaccatttccattggctacaaataag
agtgaaccgcaatcaaatttgcaatcttcctccagcccccctacagagaactttccaggc
catacacactctttgccctttacagcacaattagcaccacctgcagatggagtaggcatt
tcaccacctgatgcccttctcggtcctggttctactgattcgaagcgtgacccaagaaga
gatcctcgtcgccttgatccacggcgaacagttgcacctgctactgctagtgccatacag
gtgaaggtggaaaccactagcatgcatcagacaaatactttgtcagatataccttctgtt
cctgggaagggtgaaaaatgtgcagaatattcagtagacccacctaaaagtgaagatgag
gagcatccatcttttcatcctaataatcaagtaattgtcaaagagaatgagtttttggat
gatgccacagaaccagaggcaatttttgaattgcacgcaccggtagaagccggaattcct
tctgatgtcaatgaagagatggacaatccattgtcaccagaagctatttcaaacaatgaa
tctgatagtatggatttggaggttgatcccttttcaccagtccccaagatatcaacacca
gaggatactactcatgagttgccacttcttccatctcatttggatttgagtgacagtgag
aagatcacattgcatatattagctgttaggcggataattgacgattacaagaaaaatacc
ctggacacaagattttctttgcttgctcatttggttgctcagagtagtgctgatgataat
atcatggatttgattcagaggcacattatcttccattatcatgaccagaagggtcacgaa
ctggctatgcatgtgttgtatcagctgcagtgtgtcaatattgctgacgcaccagaaagt
tccacatctacttctgaacattacgagaagttctttatatcacttgcgaagtccttgatt
gattcgctaccggcctcagataaatcttttagtaaacttctgtgtgatgccccatgtttg
cctgagtctctgtttagattacttgagggtctttgtatgtcacaaggcaacaaccaacaa
ataaaggacagcgagggtgaccgtgttgcccaaggcctcggaacagtatggagtcttatt
ttagggcggcctccacttcgtcaagcttgcttggatattgttctgaagtgtgccattcac
tctcaagatgaagtccgaggaaaggcggttagattggttgtgaaaaagctctgtgatctg
acatatgcatcagaaaaagttgagcagttcgccacagatagtcttctggcaattgctaat
aagcatggcgtggagacagatgctaatttcacaacctcaaaagaatctacagccgaggtt
gaaataggcatccaggaagcttcagttagtggctcccaggttcccgatgctggaccttct
gaaagtggatctaccaaggcctcgttgatttcacctaaacaatcagcagtatctgaggcc
aaacgctatacttcattgttttttgcactttgcacaaagagacccattcttcttcgacag
ttgttcaatgtctatggagggtctccgaaagttgtcaaacagtgtatccattggcatatt
cccacccttgtaagaaatctgggatcctcatgtcctgaaatgctggacattattcataat
ccacctgaaggcagtgaagaacttgttagcctgatacttcaaacactgaccgaagaatca
aatccttcgcccaacctggttgtggctgttaaacatctctatgagaccaagctgaaggat
gcatctattctcattccattgctatcctcatttccgaaggaagaggtgctacccatattt
cctagactagttgatctcccacctgccagattccaagatgcacttgctcggatattgcag
ggctctgctcatactggtccagcgttaacccctgccgaagctctgattgcaatccatgaa
attaatccagaaaaggacaaagttcccctaaagaaggtcatagatgcttgcactgcttgc
tttgagcagcgcacggtatttactcagcaagttctggagaagtcattgaataaattggtc
gataatgttccgatccctcttctttttatgaggactgttattcaagcacttgatgctttc
ccagctttggttgattttgtcatgggaatactttccaggcttgtcaataagcagatctgg
aaaatgccaaagctgtgggttggattcttaaaattggcataccagactcaaccacgctcg
tttgatgttttgttacagttacctacgccgcagcttgaaattgcactgaataagtatccg
aatcttcgaccacatctttcttcctttgttaatcagcggaacttgcacaacatcttgccc
agacatactttgaatgtcttgggattcatcaatgaaccacagcaggcaccaatgccattt
gcacctgctgcgatgcaaacagcagacacaacttcctctcttcctggtacaaccctaatg
tga
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