Lolium rigidum (rigid ryegrass): 124660193
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Entry
124660193 CDS
T09103
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2-like isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lrd04812
]
124660193
Cytoskeleton proteins [BR:
lrd04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
124660193
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
Katanin_con80
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SPT8
eIF2A
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_IP5PC_F
Beta-prop_WDR19_1st
Beta-prop_VPS8
Beta-prop_Vps41
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
124660193
NCBI-ProteinID:
XP_047053945
LinkDB
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Position
6:81442369..81449543
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AA seq
828 aa
AA seq
DB search
MDPEKRGYKFQEFVAHDAEVRSLAIGKKSSRVFITGGSDRKVNLWAIGNQTPLLSLSGHT
SSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKAVRSLTGHRSSCTAVEFHPFGEFFASG
SSDTDLKIWDIKKKGCLHTYKGHRGAIKSIRFTPDGRWIVTGGEDNVVKVWDLTAGKLLH
DFKFHSGQIRCIDFHPQEFLLATGSADRTVKFWDLETFELIGSAGPEDTGVRSMVFHPDG
KTLFCGLDQSLKVFSWEPVRCHDAVDMGWNNLADLSIYEGKLLGCSYHERRVGVWVADIS
LIGPYALGVLPKANFFAELVHSMDDSPMKPNGSSTKSVRAVATSHPKNSYKVQESAESGI
RALQLTPASTDKVKKDKISTIPRRPDSSVKSSTPTRRMKLADSPSTNPRTAERNFGQRDM
PLLSRAGVANKSSATKKFHPTELADVKDIYTTQSVSMPVAVPRDILEDKSIGSVNRGIGG
RAAVPDDFCSPVHLRKLLPSGGTVDSVSSVRSMLSEPDACSEGLSGLKFSFGLTPFDKKQ
EFDGTDKGAIAQIAEKMDKIVSLEHPVQSNSDTSAFESPCSTTETARVKYVRGVAVPLGK
TKSIVDRFEKRESSSIDCSPPTSSRGDRTVRVDSPPASSTEPSQTYERDLSTVDEVMSPI
DLVRNHDEFINVLKSRLTKLEMMRHVFNQNGIKGAIAAVAKLPDIAVQADVVGTLKGKIG
LFNLDVFSSFLPVLVGLLNSKTERHAFVSLEILLDLIKIFGPVIHSTLSASSTVGVDIQA
EQRLQRCTRCFNHLQKVLQALQPLMMRGGQSAQLAQELNMSLQNLVVF
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggaccctgagaagcgcggctacaagttccaggagtttgtggcgcacgatgccgaagtt
aggtccttggcaatcggcaagaagtcgagccgtgtgttcattaccggcggcagtgaccgc
aaggtcaacctgtgggccattggcaatcagactccgctcctgagtttgtctggccacaca
agctcggttgaggctgtggagtttgatacagcagaggtgcttgtgcttgctggctcatca
aacggctccatcaagctctgggacttagaagaagctaaagctgtgcggtctcttactggg
catagatcgagttgcactgctgttgaattccatccattcggcgaatttttcgcatctggt
tcttccgatacagatctcaagatctgggatataaagaagaaaggttgcctccatacatat
aagggtcacaggggagcaattaaatcaatccgatttacacctgatgggcgatggattgtc
accggtggagaagataacgttgtgaaagtgtgggatctgacagctggaaagctcctacat
gatttcaagttccacagtggacaaatacgatgcattgattttcatcctcaagaattttta
cttgcaacaggctcagctgatcgaactgtgaagttttgggatcttgaaactttcgaattg
ataggttctgctggacctgaggataccggtgtacgttctatggtctttcacccagatgga
aaaacccttttctgtgggttagaccaaagcttaaaggtattctcttgggaaccagtaaga
tgccatgatgctgttgacatggggtggaacaatttagctgatcttagtatttatgaagga
aaactgttgggatgctcgtaccatgaacgccgtgttggtgtttgggttgctgatatatca
ctcattggaccttatgctcttggtgttttgccgaaagcaaatttctttgctgagcttgta
cattctatggatgatagtcctatgaaaccgaatggtagcagtacaaagtctgttcgtgct
gtagcaacgtcacatccaaaaaactcatacaaagtccaggaatctgctgaaagtggaatt
cgggctttgcaattaactccagcaagtacagataaagtaaagaaagataagatcagcacc
attcctcgaagacctgattcatctgtcaaatcatctactccaacgcgacgtatgaagctg
gctgatagtccttccaccaatccaagaacagcagaacgcaatttcggacagcgagacatg
ccattactatctcgtgcaggggtagctaataaatcttcagccactaagaaatttcaccct
acagagttggcggatgtaaaagatatttacactacacagtctgtttccatgcctgttgct
gtacccagagacattttagaggacaaatcaataggcagcgttaatagaggaattggaggc
agagctgcagtcccagatgatttttgcagtccagttcacttaagaaaacttttacctagt
ggtggtactgttgatagtgtcagctcagtaagatccatgctcagtgagcccgatgcttgc
tcagaaggtttgtctggcttgaagttctcgtttggactaactccatttgacaagaaacaa
gaattcgacggtacagataaaggagctattgcacaaatagcagaaaagatggacaaaatt
gtgtcattggagcatcccgtgcagtcaaatagtgatacatcagcatttgaatcaccatgc
tcaacaacagaaacagccagggtcaaatatgttagaggagtcgctgtgccattaggaaaa
accaagtccattgttgatagatttgaaaagagggagagctctagcattgattgttcacca
ccaactagctctcgcggtgatcgtacagttagagttgacagccctcccgccagttcgaca
gaaccaagtcagacatatgaaagagacttgtcaacagtggatgaggttatgagtccaatt
gatctggtgcggaaccatgacgaattcataaatgttctaaaatctcggttgacaaagcta
gagatgatgcggcatgtgtttaaccaaaatggtatcaaaggagcaattgctgcagtggca
aagttgcctgatattgctgttcaagctgatgttgttggtactctcaagggaaagattggt
cttttcaatctagatgtcttctcaagctttcttcctgttcttgtcgggttactgaacagc
aagactgaaaggcatgcttttgtttccttggaaatattattggatcttataaagattttc
gggccagttatccattcaacactgtcagctagttcaactgttggagtagatattcaagcc
gaacagaggttgcagcgttgcacccggtgttttaaccatttgcaaaaagttctgcaagcg
ctacaaccattgatgatgcggggtggtcaatcggcgcagcttgctcaggagctaaacatg
tccttgcaaaacctggtggtcttctga
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