Lolium rigidum (rigid ryegrass): 124660223
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Entry
124660223 CDS
T09103
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124660223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124660223
03012 Translation factors [BR:
lrd03012
]
124660223
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124660223
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124660223
Translation factors [BR:
lrd03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124660223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_19
NACHT
PhoH
AAA_16
ATPase
Motif
Other DBs
NCBI-GeneID:
124660223
NCBI-ProteinID:
XP_047053974
LinkDB
All DBs
Position
6:306127220..306136806
Genome browser
AA seq
1234 aa
AA seq
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MLLASSVLRGRLRPLRRPRPPIMPSPLFLSQNPNPSPASPSMSTNGVYVPPMRRLRSVIA
STSGNLAPPPSVQPAWSPDWRADGRSLSPPSPPPPQTQRRSAALPPRPPQPPPAQTQPLR
QQSAGYSRYAYDDFSEEESDREMDRASVSSSNKGASTLDNVDEWKWKLHMLLRNDNEQEI
MSRERKDRRDFDQLAQLAERMGLHSRQYARIIVFSKVPLPNYRSDLDDKRPQREVSIPSG
LQREVDALLADYLARKKTDSANFPNAAFSRSSSTDSFMTDEGFYEQQDNQASTNVVMERI
QRKKSLQLRNQQAAWQESNDGQSMMEFRRSLPANKERQSLLEAISQNQVVVVSGETGCGK
TTQLPQYILESEIEAARGATCSIICTQPRRISAISVSERVAAERGEKIGESVGYKVRLEG
MRGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPE
LRLVLMSATLNAEMFSSYFGGAPMIHIPGFTYPVRSRFLEDILEVTGHRLTPYNQIDDYG
QEKSWKMQKQALRKTKTQIASVVEDAVKTADLRDYSPQTRDSLSCWNPDSIGFNLIENVL
CHICQKERAGAVLVFMTGWDDINTLKEQLQSNPLLGDPSKVLLLACHGSMASAEQKLIFD
KPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQ
RRGRAGRVQSGECFHLYPQCVYNVFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRA
LQSPESLSVQNAIDYLKVIGAFDQNEELTVLGKHLSMLPVEPKLGKMLIFGAIFNCLDPI
LTIVSGLSVRDPFMTPFDKKDLAESAKLQFSCREYSDHLAIVHAYDGWREAERDRNGYDY
CWRNFLSAQTLKALDSLRRQFIFLLKDTGLIDENMIMCNKWSRDANLVRAVICAGLYPGV
SSVVNKEKSVSLKTMEDGQVMLYSSSVNGKEGKIPFPWLVFNEKVKVNSVFLRDSTAISD
STLLLFGGNIQRGGLDGHLKMLGGYLEFFMSRDLASTYLNLKNELENLIHHKLQNPRMDI
QTSEELLSAVRLLVTEDPCSGRFVYGRQEPRSKKAKMMLAPASVSMDRGGGHGGDNPKNQ
LQTLLTRAGNDNPTYKTKQIKNSLFRSTVEFNGMEFVGQPCANKKLAEKDAAGEAINWLT
GGGAPADTREPRDMDHMSMLTKPPRRKRHHHRRS
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgctcctggcctcctcggtcctgcggggtcgcctccgcccgctccgccggccccggccc
ccgatcatgccctccccgctcttcctctcccaaaaccctaaccccagccccgcctcccca
tccatgagcaccaacggcgtctacgtgcccccgatgcggcggctccgctccgtcatcgcg
tccaccagcgggaacctggcgccgccgccctccgtgcagcccgcgtggtcgcccgactgg
cgcgccgacggccgctccctcagcccgccctcgccgccgccgcctcagacgcagcgccgc
tccgcggccctcccgccgcggccgccgcagccgccgccggcccagacgcagccgctgcgc
cagcagagcgcggggtactctcggtatgcctacgatgacttctctgaggaggaatccgac
agggaaatggaccgtgcgtcagtctcgtccagtaataagggtgcatctactttagataat
gttgacgaatggaaatggaaactgcacatgcttctccgaaacgacaatgagcaagagatt
atgtctagggaaagaaaggacaggcgtgattttgatcagcttgcccaactggcagagcga
atgggtttgcacagccgtcagtatgctcgaatcattgtgtttagtaaggtgcccttgcct
aattatagatcagaccttgatgacaaaaggcctcaaagagaggtatctataccctctggc
ttgcaaagagaagttgatgcgttgcttgcagactatcttgcacggaagaaaacagacagt
gcgaactttcctaatgctgccttctcaaggtctagcagcacagacagttttatgactgat
gaaggcttctatgagcagcaggataatcaggcatcaacaaatgttgtgatggagagaatc
caaagaaagaaaagcttacagttgcgtaaccagcaagctgcgtggcaggaatcaaatgat
ggtcagagcatgatggagtttcgtcgcagtcttcctgccaataaagaaaggcaatcacta
ctggaagctatatctcagaatcaggtggttgtagtttctggtgaaactggctgtggtaag
acaacacagctgccacaatatattttagagtctgaaatagaggctgctcgcggtgctact
tgcagtatcatttgcactcaaccaagacgaatatcagctatttctgtttctgaaagagtt
gctgctgaaagaggtgaaaaaattggggaatcggttggctacaaagttcggttggaagga
atgagaggaagggatacgcgccttctgttctgcactactggagtcctgttgcggcgattg
ctggtagatagaaacttgaaaggtgttacccatgttattgtggatgaaatccatgaacgg
ggcatgaatgaagattttctccttattgtcctaaaggatcttcttccacgccggcccgag
ctaagacttgtattgatgagtgcaaccctcaatgctgagatgttctcttcatactttggc
ggagcacccatgatacatatacctggttttacataccctgttcgaagtcgttttctagaa
gatatccttgaagttaccgggcacagattgaccccgtacaatcagattgatgactatggc
caagagaaaagttggaaaatgcaaaagcaagctctgaggaagacgaagacccaaattgct
tctgttgtggaagatgcagttaaaactgctgatttaagggattatagtccgcagactcgt
gactcgctatcctgctggaatcctgattcaattggttttaacttaatagaaaatgtatta
tgccatatttgtcaaaaggaaagagctggtgctgttcttgtgtttatgactggctgggat
gacattaatacactgaaagagcagctgcaatcaaacccattacttggtgaccctagcaaa
gttttgcttcttgcatgtcatggttcaatggctagcgcagagcagaaactaatatttgat
aaacctgagcctggtgtaaggaaaatagttcttgctaccaatttggctgaaactagtatt
actatcaatgacgtagtctttgttgttgattgtggaaaagcaaaggagacatcttatgat
gcattgaataacacgccctgtttgcttcccacctggatctccaaggcttctgccagacaa
agacgaggaagagctggccgagttcagtcaggggagtgtttccatctttatccacagtgc
gtatataatgtgtttgctgactaccagttgccagaacttctgagaacccctctccaatcc
ctatgcttgcaaataaaaagcttgcggcttgggagcatctcagaatttttatccagagct
ttgcaatcacccgagtctctatcggtacaaaatgccattgattatctcaaagtcattgga
gcatttgatcagaatgaagagttaacagttctaggaaaacacttgtctatgcttccagta
gagcctaaattgggcaagatgcttattttcggggctatttttaactgccttgatcccata
ttaactatagtttctggacttagtgttagagatccattcatgacaccatttgacaagaag
gatcttgcggagtctgccaagttacagttttcatgtcgtgagtatagcgatcaccttgcg
attgttcatgcatatgatggatggagagaagctgaaagagatcgcaatggctatgactac
tgctggagaaattttctgtctgcacaaaccttgaaagccctagattctctccggaggcag
ttcatctttcttttgaaggacactggtctgattgatgaaaacatgattatgtgcaacaaa
tggagtcgtgatgcaaatctagttagggcagtcatatgtgcgggactatacccaggtgtt
tcgtctgttgtgaacaaggagaaatcagtttctctgaagacaatggaggatggacaggtc
atgctttactcgagttcagttaatggcaaagaaggcaagattccattcccctggctagta
ttcaatgagaaagtgaaggtgaattcagtgtttctccgggattcaacagcaatatctgac
tctacattgttgctctttggaggaaacattcaacgagggggcttggatggacacttgaaa
atgcttggaggctatctggagttctttatgagccgtgatctcgcatcaacttacttgaat
ctcaagaatgaacttgagaatttaatccatcacaagcttcaaaacccaaggatggacatc
caaaccagtgaggagcttctgtctgctgtacggttgctggttacggaggacccgtgcagt
ggtcggtttgtctatggccgacaagaaccaagatcaaagaaagcaaagatgatgcttgca
ccagcctcagtctctatggaccgtggaggcgggcacggaggggacaaccccaagaaccag
ctgcagactcttttaacaagggctggaaacgacaacccaacctacaagacaaagcagatc
aagaacagcctcttcaggtcaacagtcgagttcaacggcatggagtttgtagggcagcca
tgcgcaaacaagaagctcgcggagaaggacgcggcgggagaggcgatcaattggctcacg
ggtggaggagctcccgccgacacgagagaaccacgggacatggatcacatgtccatgctg
acaaaaccgccacgcaggaagaggcaccaccataggaggtcctga
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