Lolium rigidum (rigid ryegrass): 124660452
Help
Entry
124660452 CDS
T09103
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1-like isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124660452
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124660452
Surveillance factors
Other surveillance factors
124660452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
UDPGT
Motif
Other DBs
NCBI-GeneID:
124660452
NCBI-ProteinID:
XP_047054220
LinkDB
All DBs
Position
6:42580156..42586721
Genome browser
AA seq
1546 aa
AA seq
DB search
MAERKLDRFAALGKDGLSLGIEEDRTAAAAMGFIDESKDQQHLENSIPLSPQWLYAKPSD
AKISLPHGSLLDPAEKDVRMLEGAGDKKERRRNAFDADSSLRWLEEERETSLLGRRDRKK
EVDRDMENRKNDRRSDNVSARDNNDSRAPPTSERWNDGSTRNSGSEPRRDGKWSLRWGPD
DKEKDPRPEKKVDAEKDETHAEKQAFPGRLLPESDSRDKWRPRHRQETQTGGTGTATYRA
APGFGLEKGRVKESNAGFAPGRGRANPNSVPPFSRPSSAGPIGAPPVYGKRAATAASFRY
PRGKLLDIYRQQKVVQSFDDGRRMLEEVPSITLSTSVKPLAFVTPDNKEEAILEDIRKGR
VISSEATNATALQKERKKELEACGIDDNKDKGAPAFSGLSHEGSGALISEKDAFYNEGMF
AGGITGQLKNRTEENAPSNPHGLSGIREDTKFDEANSSADIDLSTKLSDDSNTQFNVNVD
HPTGQASYTDTKSSGQDSYPEELTLYYLDPQGGVQGPFMGTDIVSWYEDGYFGLELPVRL
SQAPDEAPFRPLSELMPYLGHKPQAVPPVTTVGSVESSDSVHNNFEDALPTSGSFGKSDE
TSKGDSENYGVNPKRGDQEAPAQSRASWFPSAEPEKVEANLDIRQQRIPETVSHDAEEVL
YTGKPNSSMGQSRQDFDNDRADFQLTSLDSRSGVGEANLPKHDAPRENELSPLGLLWSEL
EGMHPKQPLSSNVVGVNERRNPKPTGPKDIPPANIRHGPLSRMNEAPVARDGWPANLGRM
DSMNDANISGLIPQVEPELGHLNFEEQMLLTQIRREQLQQEQMMARNNLEFPGQFAGHGF
DSLHHHRQSMNPPAPEVDHLLRVQFELEHQQRRQQQQLQQEQHRQQLQQEQHRQQLQQEQ
HRQQLQQEQHQRQLQQRQAQLLQQQQQQQQQLILEQMLQQQLQSSNFGQANIDQVLLREQ
LLNDLHHQPHHFQREHDAAIEQIIQAKYGHGIHREQHNDMLDVLSRSNQRQVLPMEQQIL
LGLHHDQLQTQQLANAIRQHVGREEERHLSGVWPMDDPGQFIRPGTSPNQASRLGQFDLL
QSLQRSSSVEHHDHLERNLSLQERLHRGAQGIHSLERSGSLPGGAPLPNPDLVALARHHG
LSQLETHGDLYSAGQMPMHASGVHPQQHRLQEQLSGSHMGRLERNWSDANGQLQNSLMEA
SRINQLQIEAEKQRRKVEMNLPIDNPHAWASLMSNERNPETDLSDMIHQKLVLQAQQSRG
FPDVPVAASFGRKDPSSLFAQPAADNPLRSPVDRLSFDDPLADRSHFAKMGHLGQDGPTS
LDSLPNNIEMNRKLGVRSSSATMLDIQRGEYPDVMGGSLSTNQLVGNANDVARRKRQGSS
ANLAVEDTDFSEAVNNWADTGISKGSSHSLLKRTTNQHIATSQAASTDLPSAVRSKKAGH
ISSASSDEHKLESGVTSGANAVDAPASANKETFGNQDASGPSFSEMLKSTKKPPLQYDAS
ESTDGGPGGKGAKKKAKKGKQIDPSLLGFKVHSNRILMGEIHRPDD
NT seq
4641 nt
NT seq
+upstream
nt +downstream
nt
atggccgagaggaagctggatcgattcgcggcgctcggaaaagatgggttgtcgctcggg
atcgaggaggataggaccgccgccgccgccatgggtttcatcgacgaatccaaagatcag
cagcacctggagaacagcattcccctgtcccctcagtggctttacgccaaacccagcgat
gccaagatttcactgcctcatgggtccttgcttgaccctgctgagaaggatgtgagaatg
ctggaaggcgctggggataagaaagaacgccgtcgaaatgcatttgatgctgacagcagt
ctccgctggcttgaggaggagagggagacgagcttgcttgggaggagggaccgcaagaag
gaagtggaccgggatatggagaaccgtaaaaatgatcgccggtccgacaatgtttctgca
agggacaacaacgattcacgggcgcctcctacatctgaaaggtggaatgatggctccacc
cggaattcagggagtgaacctaggcgtgatgggaaatggtcattaagatggggacctgat
gacaaggagaaggacccgagaccagagaagaaggttgatgcagaaaaggatgaaactcat
gctgagaaacaggcatttcctggaagactgctacctgaatcagactcccgtgataaatgg
agacctcgtcaccggcaggagactcagactggtggtactggcacagcaacataccgtgct
gctccaggatttggattggagaaaggacgtgtcaaggaatccaatgctggttttgcccct
ggaagaggcagggcaaaccccaactcagttccacccttcagccgtccatcgtctgctgga
ccaattggtgctccacctgtgtatgggaagcgtgcggcaactgctgcttcttttcgctac
ccaaggggtaaacttcttgacatatacaggcaacaaaaggttgttcagtcctttgacgat
ggccgccgaatgctggaggaagttccttccataacactctctacatctgttaagccacta
gcctttgtcacccctgataacaaagaagaggctattttggaagatatcaggaagggcagg
gtcatcagcagtgaagcgacaaatgcaactgcactccaaaaggaaaggaaaaaagagctt
gaagcttgtggtattgatgacaacaaggataaaggagctccagcatttagtgggttaagt
catgaaggatctggtgctttaatatcggagaaggatgcattttacaatgaagggatgttc
gcaggtggtattacaggtcaactgaagaatcgtactgaggaaaatgctcccagtaatcca
catggactttctggcatcagggaagacacaaagtttgacgaggccaactcaagtgctgat
atcgatcttagcacaaagctatctgacgattcaaatactcagtttaatgtaaatgttgac
catcctactggccaggctagttacacagacacaaaatctagtggccaggatagttatcca
gaggagctgaccctatactatctggatcctcaaggtggtgtgcagggtccattcatgggt
actgatatagtgtcctggtatgaagatggatattttggtttggagctacctgttcgtcta
tctcaggctccagatgaagctccttttcgcccactttctgaactcatgccttatcttgga
cataagccccaagctgtcccacctgtaaccactgttggaagtgttgaatcttcggattct
gtacataacaattttgaagatgcactacctacttctggttcttttgggaagagtgatgag
acatctaagggggactcagaaaattatggagtcaatcctaaaagaggtgaccaggaagca
ccagcacagtcacgtgctagttggttcccttcagctgagccagaaaaggttgaagcaaac
ctagatatccgtcagcagcgcattccggaaactgttagtcatgatgctgaagaggtgctg
tacactgggaagcctaatagcagcatgggtcaatctcggcaggattttgataatgaccgt
gcagatttccagttgacgtcacttgattcccgttctggggtgggtgaagctaatttgccc
aagcatgatgctcctagagagaatgagctcagtcctcttggcttactttggtctgagctg
gaaggtatgcatcctaagcagcctctctcatcaaatgtggttggtgtaaatgagcggaga
aaccccaaacctacaggccccaaggacattccacctgcaaatatcagacatggtccgctc
agcaggatgaatgaagcccctgttgcgcgtgatgggtggcctgctaatcttggtcggatg
gacagcatgaatgatgcaaacatttcaggtctaattccccaggttgaacctgagctagga
catctgaattttgaggagcaaatgctacttactcagattcgaagggagcaactgcagcag
gaacaaatgatggctcgtaacaatctggagtttcctggacaatttgcagggcatgggttt
gattcattgcaccatcaccgacagtcaatgaatccgccggctcctgaggtggaccatctt
ctgagagtacagtttgaacttgaacatcagcagcgtcgccaacagcaacagcttcagcag
gagcagcaccgccagcagcttcagcaagagcagcaccgccagcagcttcagcaagagcag
caccgccagcagcttcagcaagagcagcatcaaaggcagctgcagcagcgccaagctcag
ctgctgcaacagcaacagcagcaacaacaacaactgattcttgaacaaatgctgcagcaa
cagttgcagagttcaaactttggacaagctaacattgatcaagtgttacttcgggaacag
ttactgaatgacttgcatcaccaaccccatcattttcaaagggagcatgatgcagctatc
gagcaaatcattcaagcaaaatatgggcatggaattcacagggagcaacacaatgacatg
ctagatgttctgtcacgctcaaaccagaggcaagtgcttcctatggagcagcaaattctt
ttgggtctgcatcacgatcagctccaaacacaacaattggccaatgctatacgacaacat
gtcggcagggaggaagaaaggcatttaagtggggtctggccaatggatgaccctggccaa
tttatccgcccaggaactagtccaaatcaagcttctagacttggtcaatttgatcttctg
cagtcccttcagaggtcctcatctgtggagcatcatgaccatctcgaaagaaacctttct
ttgcaggaacgattgcacaggggagctcaaggtattcattccctagagcggtctggctct
ttgcctggtggtgctcctttacctaatccagatcttgttgccctagcacgtcatcatggc
cttagtcagttagaaacacacggcgatttatattctgcaggccaaatgcctatgcatgcc
tcaggggttcatccccagcagcacagacttcaggagcagctgtctggttctcacatggga
agactggaaaggaactggtcagatgccaatgggcaattgcaaaatagcctgatggaagct
tcgcgcatcaaccagttgcaaattgaagcagagaagcagaggaggaaagttgaaatgaac
cttcccattgacaacccacatgcatgggcatcacttatgagcaacgagaggaacccagaa
actgatttgagtgatatgattcatcaaaaactggttcttcaagcacagcaatctcgtggt
ttccctgatgttccagtggcggcatcttttggacgtaaagacccttcttcactctttgca
caacctgctgcagataaccctttaagatcacctgttgataggttatcttttgatgatcca
cttgcagacaggtcacatttcgcaaaaatggggcacttgggacaggatggaccaaccagt
ctagatagtttaccaaacaacattgagatgaaccgaaaactgggcgtcagatcaagctct
gcaacaatgcttgatattcaaaggggagaatacccagatgtgatgggtggcagtttatcc
actaaccaattggttgggaatgccaatgatgtagccaggaggaaaaggcagggttctagt
gcgaacttggcagtggaggacactgatttttctgaagcggtcaacaactgggctgatact
ggcatttctaaaggaagctcccattccttgctaaagcgcacaacaaaccagcacatcgct
acatctcaggcagcgtcaacggacctgccttctgccgttaggtcgaagaaggcaggccat
atttcttctgcatcttctgatgagcataagttggaatcaggagtcacgtcaggagcaaat
gctgtggatgcccctgcttcagccaacaaagagacctttggcaatcaggatgcttctggt
ccttcgttcagtgaaatgctcaagagcacaaagaagcctcccttgcagtacgacgcctct
gaatccacggacggcggtcctggtggtaagggtgcgaagaagaaagcaaagaaaggcaag
cagatagacccttcacttctcggcttcaaggtgcacagcaaccgcatcttgatgggtgag
atccaccgccctgacgactaa
DBGET
integrated database retrieval system
