Lolium rigidum (rigid ryegrass): 124660718
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Entry
124660718 CDS
T09103
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd00040
Pentose and glucuronate interconversions
lrd01100
Metabolic pathways
Module
lrd_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
124660718
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
124660718
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
124660718
NCBI-ProteinID:
XP_047054488
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Position
6:62337480..62340584
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AA seq
399 aa
AA seq
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MTKPVLSLLAHLHAALLLLSGAGAAVYDVTRYGARPDGVTDSTLPFLRAWADACRSPRQA
TVLVPPGMFLLGSATFTGPCATHAVTFSIAGTLVAPTGYGWDATTGRWITFESVEGLTVS
GGVLDGRGSSLWSCKRQQQQQPHVHCPTGASSLTISNSRDVVVDGTRSTNSELFHMVVLQ
SHGVTLQQVSVDAPEDSPNTDGIHIHMSSNVAVSNADIRTGDDCVSIGPGNSNLWIERVS
CGPGHGISIGSLGQQQGMAVEAVRNVTVKTTWFTGTTNGFRIKTWGTSKRGLVSGITFVD
STMIGVHNPIIIDQNYCPGKKSCSDRSSGIKISQVRYIDIRGWSMTPVAVTFNCSRSNPC
SGISLQNVRLMYEGMRLAKSSCRNVNGRTTGLVVPPSCL
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagccggtcctgagcctgctggcgcacctccacgccgcgctcctgctcctctcc
ggcgccggcgcggcggtgtacgacgtgacgcgctacggcgcccgccctgacggcgtgacg
gactcgacgctgccgttcctccgcgcgtgggccgacgcgtgccgctcgccgcgccaggcc
acggtgctcgtgccgccgggcatgttcctgctggggagcgccacgttcaccggcccgtgc
gccacccacgccgtcaccttctccatcgccggcacgctggtcgcgcccactggctacggc
tgggacgcgaccaccggcaggtggatcaccttcgagtccgtggagggcctcaccgtctcc
ggcggcgtcctcgacggccgcggctcctccctctggtcctgcaagcggcagcagcagcag
cagccgcacgtccactgcccgaccggcgcctcgtctctgacgatctcgaactcgagagac
gtggtggtggacgggacgaggtcgacgaacagcgagctgttccacatggtggtgctgcag
agccacggcgtgacgctgcagcaggtcagcgtggacgcgccggaggacagccccaacacg
gacggaatacacatccacatgtccagcaacgtggccgtctccaacgccgacatccgcacc
ggggacgactgcgtttccatcggcccgggaaactctaacctctggattgagcgtgtctcg
tgtggtccaggtcatggcataagcattggaagtttgggccagcaacaagggatggctgtg
gaggcggtgcgaaacgtgaccgtgaaaacaacatggttcactggcacaacaaacggtttc
aggatcaagacatgggggacctccaagcgaggccttgttagtggcatcaccttcgtggac
tccaccatgattggcgtccacaaccctataatcatcgatcaaaattactgccccggaaaa
aaatcgtgctcagatcggagttcgggtatcaagatcagccaggtgaggtacatcgacatt
cgtgggtggtcgatgacgccggttgccgtgaccttcaactgcagcaggagcaacccgtgc
agtggaattagcttgcagaatgtgaggctcatgtatgagggcatgcgtcttgcaaaatca
tcctgccggaacgtcaatgggagaacgactgggctagtcgtgcccccaagctgcctctga
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