Lolium rigidum (rigid ryegrass): 124660873
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Entry
124660873 CDS
T09103
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124660873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124660873
03041 Spliceosome [BR:
lrd03041
]
124660873
03009 Ribosome biogenesis [BR:
lrd03009
]
124660873
03016 Transfer RNA biogenesis [BR:
lrd03016
]
124660873
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124660873
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124660873
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124660873
Complex C
U4/U6.U5 tri-SnRNP related factors
124660873
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Helicases
124660873
Transfer RNA biogenesis [BR:
lrd03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124660873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
ArAE_1_C
DUF3740
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
124660873
NCBI-ProteinID:
XP_047054669
LinkDB
All DBs
Position
6:complement(217951741..217958975)
Genome browser
AA seq
1005 aa
AA seq
DB search
MEEVENSSKRKSAELDSQDNSTAAVPDGQQPPQPGSAAKRPNLARSCIHEVAVPNGYDLD
KDEAVNGTLSNPVFNGEMAKTYPFQLDPFQSVSIACLERNESILVSAHTSAGKTAIAEYA
IAMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRA
MLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAE
WICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQP
SQQDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMS
MSKLDFNTEEEKDNIDQVFRSAILCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPIIKE
LVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIGSGEYIQMSGRAG
RRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEH
VIRNSFHQFQYEKALPEVVQKITRLENEASLLDSSGENDLAEYHKLVLDISELEKKIMSE
MIRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPATSTTLPPALSASRGNNYIVDT
LLHCSSSSNENGSRSKPCPPRAGEKGEMHVVPVPLPLVSGLSSVRINIPSDLRPPEARQN
ILSAVQELGKRYPQGLPKLHPITDMGIEEPDLVDVVHKLEVLEQKLDSHPLHKSDQSDQQ
LSWYQKKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDADGVLQLKGRAAC
LIDTGDELLITELMFNGTFNDLDHHQVASVVSCFVPCEKSSEQIRLRNELSKPMTQLQEA
ARKIAEVQRECKLDVNVEEYVESTCKPYLMDVIYSWSKGSTFGEVIEMTDIFEGSIIRLV
RRLDEFLNQLKAAAEAVGEVNLENKFGLASESLRRGIMFANSLYL
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggtggagaatagcagcaagcggaaatcagccgagctggattcacaagacaat
tccactgctgctgttccggatgggcagcagccgccccagcctggctcggctgccaagcgt
ccgaacctcgcccggtcgtgcatccatgaagtcgccgtcccgaacggctacgacttggac
aaggacgaggctgtaaatgggaccctttcaaatcccgtgttcaacggggagatggccaag
acatacccgtttcagctcgaccccttccagagcgtatccatcgcgtgcttggagcgcaac
gaatctatcttggtctcggctcacacctctgcggggaaaacagccattgctgagtacgcg
attgcaatgtcgttcagggacaagcagagggtcatatacacctccccgctgaaggctctc
agcaatcagaagtacagggagcttagccaggagttttctgatgttgggttgatgactggc
gatgtcacgcttcagccaaatgccacttgcctggtcatgaccacggagatcctcagggcc
atgctttataggggctccgaggtgatcaaggaggttggttgggttatatttgatgagatc
cactacatgaaggatcgggagagaggcgttgtgtgggaagagagtattgtcttcctcccc
cctgccatcaagatggtcttcctgtctgctaccatgtccaatgcaaccgagtttgctgag
tggatatgcaacctgcacaagcagccttgtcacgtggtgtacacagacttcaggcccaca
ccgttacagcactatgtcttcccaataggtgggtctggtctctacctcgtagtggatgaa
aatggtcagttcagggaggataattttctaaagcttcaagacacatttgcaaagcaacct
agtcagcaagatgggaggaagggtggtggacctaaagccagtggtcgaatagccaaaggt
ggaaatgcttctggaacttctgacatatacagaattgtcaagatgattatggagcgcaag
tttcaaccagtcataattttcagctttagtagaagagaatgtgagcatcatgcgatgtca
atgtcaaaacttgatttcaacactgaagaagaaaaggataacatcgatcaggttttccgt
agtgctattctctgtttgagcgaggaagatagaggtttacctgctatagagttgatgttg
cctcttcttaaacgaggtattgcagtacaccattctgggttgcttccaataattaaggag
ctggttgaattgctcttccaagaaggtcttgtgaaagctctctttgctacagagacgttt
gccatggggctgaacatgcctgcaaaaacagttgtcttcacatctgtcaaaaaatgggat
ggtgatagtaaccgttatattggttctggagaatatatacagatgagtggaagagctggt
cgccgtggcaaggatgaacgtggcatttgtgttataatgatagatgagaagatggaaatg
agtgttatcaaggacatggtgttaggtaaaccagcacctctcatcagtactttccgactg
agctactacactattctgaatttactgagtcgtgctgagggccaatttactgctgaacat
gtcatccggaattctttccaccagtttcagtatgaaaaggcattacctgaagtggttcaa
aagattacaaggttggaaaatgaagctagcctgctggactcctctggagagaatgatctt
gctgaatatcacaaattagtgcttgatatatctgaacttgagaagaaaatcatgtctgag
atgataagaccagaaagagctttgttatatttggttcctggaaggctggttaaggtgagg
gatggttcaacagattggggatggggtgttgttgtaaatgttgtgaagaaacctgcaaca
tctactactcttccccctgcattaagtgcatctcgtggtaataactatatagtggatacc
ttgcttcattgttcttctagttcgaatgagaatggatcacgttcaaagccatgcccacct
cgcgctggggagaagggagagatgcatgtggtgcctgtaccattacctttagtatctggt
ctaagcagcgttagaatcaacattccatctgatctacgaccacctgaagcaagacaaaac
atactttctgcagttcaagaactaggaaagcgttacccccaagggcttccaaagctacat
ccaattacggacatgggtattgaagaacctgatttagttgacgtggttcataaacttgag
gttctcgagcagaaactagattctcacccactacataagtctgatcaaagtgaccagcaa
ctgtcatggtaccaaaaaaaagctgaactgaatcatgaaattcaacaactaaagtcaaag
atgcgggattcacagctacaaaaatttagagatgaactaaagaaccggtctcgcgttcta
aaaatgctgggtcacattgatgcggatggtgttctccagttaaagggacgtgctgcctgc
ttaattgacactggggatgagctgcttatcactgaacttatgtttaatggtacatttaat
gacctggatcatcatcaagttgcttccgtggttagctgttttgtaccgtgtgagaagtct
agtgagcaaatacgcctgagaaatgagctttctaagccaatgacacaactccaagaggct
gcaagaaaaatagctgaggtacaacgggaatgcaaattggatgtaaatgtggaggaatac
gttgaatcaacttgtaaaccctacctgatggatgtcatatactcctggtcaaagggctcc
acctttggagaggtcatagaaatgactgacatttttgaaggaagcatcatacggctagtt
aggaggttggatgaatttctgaatcagctaaaagctgctgctgaagctgttggggaggtg
aaccttgagaacaagttcggattggcaagcgagagcctacgccggggtatcatgtttgcc
aactcgttgtatctgtga
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