Lolium rigidum (rigid ryegrass): 124660917
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Entry
124660917 CDS
T09103
Name
(RefSeq) nuclear pore complex protein NUP98A-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124660917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124660917
03036 Chromosome and associated proteins [BR:
lrd03036
]
124660917
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124660917
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124660917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
124660917
NCBI-ProteinID:
XP_047054721
LinkDB
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Position
6:227187870..227192272
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AA seq
923 aa
AA seq
DB search
MFGSTNPFGQSSGSAFGQTSSNPFGAQSGFGQTSTPANNPFGSPTPAFGAPQPGAASPFG
ATPSAGAFGQPSAPAFGATSTPAFGAASTGGFGQPSTPAFGTPSSSPFGTSTPAFGASST
PAFGTASSSFGSGSLFGQKPSFGGFGSSPSQSSPFGGAFQQTQPAFGNTTFGATTTPAFG
TTPTPAFGATTTPAFGSTSTSLFGASSTPAFGSTPFGSTTTPAFGSSGSTTAFGVSSAPA
FGASTTPSFGASTSAFSFGSSPSFGQTAAAAGTTPFGTTPSPFGAQTSPFGGQTAAPAFG
QASFGNQSGGTRTQPYAQTPDADSATSGQPAAKLNSISAMPAYKDKSHEELRWEDYQRGD
KGGPNTSVAPVANSFASPQPIFQANPTTPANPFAKASTGGFGATPNPFSSATIASFGQTS
SSAFSANTSPSLFGNTTTSLFSTPSTTTNPFNTGLSINNTQSAGLFQSSPAMTQQPFSQS
FNQQSSTPAFSTGMFNTSNPGMTGGLFSNTSSPFQTPTFPQSAPAQTPSLFSFPQTQQAS
AGGFSGVGGFSGVSNTLNLGQFGQQTTAQSNMVMQPTLISNPFGTLPAMPQMSIGNGGSS
PSIQYGISSLPVSEKPLPSRAVSMVVPRHLSQRRIKLLPRKYNQTSDGKVPFFADDEESS
VTPKADAFFIPRENPRSLVIRPTEQLRSRSAVDRQSIPSASTDLGKQKDVLVSRERNKAS
MSPTGSDPVVNGIYRDGHHNASNKPEAEARYVNGSSVDKLMPKLSQADYYMEPSLEELAA
KERAEPGYCCRVRDFVVGRQGYGSIKFLGETDVRSLDLESIVEFNNREVIVYKDDSKKPP
VGEGLNKAAVVTLLNIKCVNRKTNEQYTEGPRVDKYKEMLVKKAEEQGVEFISFDAVKGE
WKFKVKHFSSYGFAEAESGLVDS
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctccaccaatccgttcgggcagtcgtccggcagcgccttcgggcagacctcc
agcaaccctttcggggcccaatcggggttcggccagaccagcacccccgccaacaatccc
ttcggcagccccacccccgccttcggggcgccgcagcccggggccgcctcgcctttcggc
gccaccccctccgccggcgccttcggccagccgtccgctccggccttcggggccacatcc
accccggccttcggcgccgcgtcaaccggcggatttggccagccatccacgccggcgttc
ggcaccccgtcgtcctccccgttcgggacctccacgccggcctttggcgcatcgtcaacc
cctgcgtttggcaccgcatcctccagcttcggcagtggatctttgtttggacaaaagcca
agttttggtggtttcggctcatctcccagccagtctagtcctttcggtggcgcattccag
caaacacaaccagcatttggcaataccacttttggcgccacaactacgccagcctttggc
accacgcccacgccggcctttggtgccacaaccaccccagcatttggttcaacatcaaca
tccctattcggtgcttccagcacgccagcatttggttccacaccctttggttcaaccacg
actcctgcttttggatcttcaggttctaccacagcgtttggtgtgagtagtgctcccgct
tttggagcttcaaccacgccttcgtttggtgcatcaacaagtgcttttagttttggttct
tcaccgtcatttggacagacagcagctgcagccggtactactcccttcggaacaacccct
tcaccttttggggcacaaacttctccgtttggtggacagacagcagcaccggcgtttggg
caagcttcatttggaaatcaatctggaggaaccagaacacagccttatgcacaaacacca
gatgctgacagtgctacaagtggtcaacctgctgcaaaacttaattctatatcagccatg
cctgcgtacaaagacaagagtcatgaagaattgaggtgggaagattaccagcggggagac
aaaggtggaccaaacacttctgtagcaccagttgcaaacagctttgcgtctccacagccg
atttttcaagcaaatccaacgacaccagcgaacccattcgctaaggcctctacaggtggt
tttggtgctactccgaacccattttcgtcggccacgattgcctcatttggtcaaactagc
agttctgcattttccgcaaacacttcaccatctctgtttggaaatactactacttcacta
ttcagcacgccatcgacaaccacaaatccattcaacactggcttatccattaataacact
caatcagctgggctgtttcagtcttcacctgcaatgacgcagcagccatttagccagtct
tttaaccagcaatcaagcactccagctttctccactggtatgttcaacacatctaaccct
ggaatgactggagggctgtttagcaacacatcttcacctttccaaacaccaacatttcca
caatctgcccctgctcaaacaccaagcttgttctcattccctcagactcaacaagcttct
gcaggtggattctctggtgttggaggattctctggtgtttccaacacgctgaatctgggc
cagttcggacagcaaaccactgcccagtccaatatggtcatgcaaccaactcttatttcg
aatccctttggaacacttcctgcaatgcctcagatgtccattgggaatggtggatcctct
ccctctatccagtatggaatatcaagcttgccggtttctgagaagcctctcccgagcaga
gcagtatccatggttgttcctaggcatttgtcacagaggaggataaaactgttgccacgg
aaatataatcagacatctgatggaaaggttccattctttgctgatgatgaagaatcttct
gtgacaccaaaagcagatgcctttttcatccctagagagaacccgagaagtctggtaatc
cgtccaactgaacagttgcgttcacgtagtgcggttgacaggcaatcaataccgagcgct
tcaactgatcttggcaaacaaaaagatgttttggttagcagggagcgcaacaaggcttcc
atgtcaccaactgggtctgatccagtggtaaatggcatctaccgcgatggccaccacaat
gcatcaaataagcccgaggctgaagcacggtatgtgaatggttcttctgttgacaagctc
atgcctaagctctcccaggcagattactacatggagcctagtctagaggagcttgccgcc
aaagaacgtgctgaaccaggctactgctgccgggtgagagattttgttgtcgggcgccaa
ggctatggcagcatcaaattcttgggagagactgatgtaaggagccttgatctggagtca
atcgtggagttcaataaccgtgaagtgattgtgtacaaggacgacagcaagaagcccccg
gttggtgagggcctgaacaaagctgctgtggtgactcttctgaacatcaagtgtgttaac
aggaagacaaacgagcagtacacggagggtcctagggtggacaagtacaaggagatgctg
gtgaagaaagctgaggagcagggcgtggagttcatctcgtttgacgctgtcaagggtgag
tggaagttcaaggtgaagcacttcagctcctacgggtttgctgaagctgaatcaggcctg
gtcgattcctag
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