Lolium rigidum (rigid ryegrass): 124661049
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Entry
124661049 CDS
T09103
Name
(RefSeq) DNA damage-binding protein 1-like isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03420
Nucleotide excision repair
lrd04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124661049
09124 Replication and repair
03420 Nucleotide excision repair
124661049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lrd04121
]
124661049
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124661049
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
124661049
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
124661049
TCR (transcription coupled repair) factors
Cul4-CSA complex
124661049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
124661049
NCBI-ProteinID:
XP_047054864
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All DBs
Position
6:complement(176683457..176693255)
Genome browser
AA seq
1079 aa
AA seq
DB search
MATAWNYVVTAHKSTAVSRSCVGNFTAPHHINLIVAKCTRIEIYLLTPQGLQLMFDVPLY
GTIATLELFRSHSEAQDFLFVGMERYRYCILYWDGRQLLTRSGGDASHFGGRPTDNGQIG
IIDLHHRLIGLHLYDGLFKVIPFDNQGQLKEQLNIRLQELLVLDIKFLYGCEIPTVAVLY
QDNKDARHVKTYEIALEDKEFVEGSWSQNNLDNGACLLVPVPLGGVIIIGEDTIVHWSST
TFKSLSINQAIIGAVGRVDPDGSRYLYGDNTGSLHLLVITQERGRVTDLKTHYMGETSIA
SKISYLDSGLVYIGSQFGDSQLIKLNNQADASGSFVEILEQYMNIGPIVDLCVVDLERQG
QGQVITCSGAHKDGSIRAIRNGIVITNQASVQLQGIKGLWSLKTSLNDQYDTFLVVTFIN
ETHFLAMNKENELAETDIEGFDSETQTLVCGSAIHNQLIQVTANSVRLVSSTSLDLLDQW
FAPTGFSINVAAANASQVLLATGGFHLVYLEITNSKLVEVKHIELEHDISCLDINSVGEN
PQSSSFAAVGMWKDISVRIFSLPGLQLNWKEKFAEFVPRSVLLCTIEEVSYLFCGLGDGH
LFSFVLNISKCELSARRRFSLGTQPISLYKFSSHNRTHVFAASDRPTLIYSSDKKLLYSY
VNLKEMSHVCPFNTAVSPESIAIAKEAELSVGAINDFRKLHIHTIPLNEQARRICYQEQS
RTLAFCSFKDKDIHTESETHFVHLLDHQTFGFLSTHTLDTFEWGCSIVSCSFSDDENSYY
CVGTAYVLPMENEPTKGRILVFLVEKGELQLISEKETKGAVYSLNAFNGKLLAAINQQIR
LYKWVQRDDRSHELQSECSYHSDVLPMHTQTRGDFIVVGDIMRSLSLLVYKHDEGLIEYK
ARDFNASWISAVEMLDDDIYIGADNCCNLFTVRESETHEGRLDVIGEYHLGDLVNSLQHG
SLVKHHTRSLVGKYPTAIFGTISGAIGVIASIPSNLHMILEKLQSILAKSIKSVGNLSHA
EWRSFYNVRRTSVARNFVDGDLIELFLKLSSSHKLAVAMAMGVDVDKLCLLVEELADLH
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcatggaactacgtggtgaccgcgcacaaatccaccgccgtctcccgctcc
tgcgtcggcaacttcaccgcgccccaccatatcaacctcatcgtcgcgaaatgcacccgt
atcgagatttatttgcttacacctcaaggccttcagcttatgtttgacgtaccattgtat
ggaaccattgcaacacttgagctcttccgttctcatagtgaagctcaagattttcttttc
gttggcatggaaagatacagatattgtattctttactgggatggaagacaacttcttaca
agatctgggggagatgcttctcattttggtggacgccctacagacaatggacagattgga
ataattgaccttcaccatcgactgattggtctccacctatatgatggcttatttaaggtt
ataccatttgacaatcaaggacagctgaaggaacaattgaacatcaggcttcaagaactt
ctagtgttggacatcaagtttctctatggctgtgaaatacctacagtagcagttctttac
caggacaacaaggatgccagacatgttaagacatatgaaattgcattggaggacaaggaa
tttgttgaaggttcttggtctcagaataatttagacaacggtgcttgtctgttagtacct
gtaccactaggtggtgtcataataattggtgaggacacaatagttcactggagttccacg
acatttaaatctctatcaataaatcaagctatcattggagctgttgggcgggttgaccca
gatggttcccgctatttatatggagacaatactggctctctgcatttacttgtaattact
caagaacggggaagagtgaccgatttaaaaactcactacatgggagagacttcaattgca
tcaaaaatatcatatcttgatagtggtctcgtttatattggttcgcagtttggggactca
cagctcataaaactgaataatcaagcggatgcaagcggttcatttgttgaaattcttgaa
caatatatgaacattggaccaattgtagacttgtgtgtggttgatcttgaaagacaaggg
caaggtcaggtgattacttgttcaggtgcacacaaggatggttcaattcgggcaattcgt
aacggaatagtgattactaaccaggcttcagtacaactccaaggcatcaaaggactatgg
tctttaaaaacttcattgaatgatcaatatgacacgttcttggttgtaacctttataaac
gagacacacttcttggcgatgaataaggaaaacgaattggcagaaaccgatatagaagga
tttgattcagaaacacagactctggtctgcggaagtgccatccacaatcagcttatacag
gttactgctaattctgttagattagtcagctctacttctctggatttactggatcaatgg
tttgcaccaacaggattttcaatcaatgttgcagcagctaatgcaagccaggttttgttg
gcaactggtggtttccatctcgtctatctagaaattaccaactctaagttggtggaagtg
aagcatatagagcttgagcatgatatttcttgccttgacataaactcagttggtgagaat
ccacaatctagctcctttgcagctgttgggatgtggaaagatataagtgtgaggatattt
tcgctccctggccttcaactaaattggaaggagaaatttgctgaatttgttcctcgttct
gttctgctgtgtactattgaagaggtgtcatacttgttctgtggtcttggagatggtcac
ctcttcagttttgtgttgaacataagtaaatgtgaactatcagctagacgcaggttctcc
ttgggaacacaaccaatcagcctctataaattctcatcccacaatcgaactcatgtgttt
gctgcatcagataggccaactctcatatacagcagtgacaagaagttactctatagttat
gtcaatctgaaagaaatgagccacgtgtgcccttttaatacagctgtttccccagaaagc
attgcgatagctaaagaagctgaactttcagttggagcaattaatgacttcagaaaactt
catatccacacaatccccttaaacgaacaagcacgccgcatctgttaccaggaacagtct
cgaacacttgcattctgcagtttcaaagataaggacattcacacagagagcgagacgcac
tttgttcatctgttagaccatcaaacttttgggtttttgtcaacacatactcttgatact
tttgaatggggttgctccattgtcagctgctcattttctgatgatgaaaattcttactat
tgtgtgggaacagcttatgttttacccatggaaaatgaacccacaaagggtcggatcctg
gtttttttagttgaaaaaggagagttgcaactaatctcagaaaaagaaactaaaggagct
gtctattcgcttaatgcattcaatggaaaattattggctgctattaatcagcagatcaga
ttgtacaagtgggtgcagcgagatgataggtcacatgaactgcaatcggagtgtagctac
cacagtgacgtattgcctatgcatactcaaacccgcggtgatttcatcgtggttggagac
attatgagatcattatcgttgctggtatacaagcatgacgaaggcctgattgaatataaa
gctagggattttaacgcaagctggattagtgcagttgagatgctcgatgacgatatttat
atcggtgcagacaattgttgtaacctgtttaccgtgcgtgagagtgagacccatgaaggg
cgtcttgatgtcattggggagtaccatctgggggacttggtgaatagtttgcagcatggt
tctctggttaaacaccacacacgctcactggtaggcaagtatcctacggccatctttggc
acgatcagtggcgcaattggtgtgattgcatccattccaagtaacctacatatgatcctt
gagaagctgcaatccatccttgcgaagtccatcaagagtgttggtaatcttagccatgca
gaatggcggtcattctataacgtcaggaggacgagtgttgcccggaacttcgtggatggt
gatctgattgaattattcctcaaactgagttcaagccacaagcttgcagttgcaatggcg
atgggcgttgatgtggataagctgtgtctgttagtggaagagttggcggatcttcactaa
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integrated database retrieval system
