Lolium rigidum (rigid ryegrass): 124661608
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Entry
124661608 CDS
T09103
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
lrd03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124661608
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
124661608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124661608
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
124661608
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
124661608
NCBI-ProteinID:
XP_047055472
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All DBs
Position
1:complement(117087160..117091844)
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AA seq
591 aa
AA seq
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MDPDGDGSFHRKEAISAVQDVDQYYGDDDDYDDLYNDVNVGDGFLHATQPPPPQPPALPP
KQHQPPPHQTPPPPQQLPSPSLPLPPPPPMGQPDKPHIPGVQPVPAPAMDRPNPGHLPPP
PQPPLAAQPPPHHHQIQTGGDGFHRQGGGPNYGGGPIVVGNGGGGDGPGATTLFVGDLHW
WTTDADLEAELVKYGHVKEVRFFDEKASGKSKGYCQVDFFDPGAAAACKEGMNGHLFNGR
PCVVAFASPNTVRRMGEAQMKNHQPMGQQNSGIQKGGRGGGGPPGGPVGPQVGGNYGGGG
RGGGGAGGGGGGGAGGGNWGGRGGGMGGRGPGGNMRNRMGPVGGRGIMGNGGMVAPPPPM
MHPGGMMGQGFDPTGYGAAMGRMGGGFGGFPGGPGGSPFPGLMQPFPPVVAPHVNPAFFG
RGGGMGAGGVGMWPDPSMGGWGGGGGGEEQSSYGDDAASDQHYGEGGSHGKERPSEREWS
GAPERRREREKDLPPPPELPERRHRDERDMGRERERERDRGDRDRERDRDRERDRGDRER
HRDDRDRHGDYHRHRDRESDRNEDWDRGRSSGRRSRSREVDHSKRRRMSHE
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggatcccgacggggacggctccttccaccggaaggaagccatctccgccgtccaggac
gtcgaccagtactacggcgacgacgacgactacgacgacctctacaacgacgtcaacgtc
ggggacggcttcctccacgccacccagccgccgccgccccagccaccggcgctgcctccc
aagcagcaccagccccctccgcaccagactcctcctcctccgcagcagctgccctcgcct
tcgctcccgctgcccccgcctccacccatggggcagccggacaagccacacatcccgggc
gtccaaccagtccccgcccccgccatggaccggcccaacccgggccacctcccgccgccg
ccgcagcctcccctcgccgcgcagccgccgcctcaccaccaccagatccagacgggcggg
gacggcttccaccgccagggcggcggacccaactacgggggcggcccgatcgtggtcggc
aacggcgggggcggcgacggccccggcgccaccacgctcttcgtcggggacctccactgg
tggaccaccgacgcggatctggaggcggagctcgtcaagtacggccacgtcaaggaggtc
cggttcttcgacgagaaggccagcggcaagtccaagggctactgccaagtcgacttcttt
gaccccggcgccgccgccgcctgcaaggagggcatgaacggccacctcttcaatggccgc
ccctgcgtcgtggcctttgcttcgcccaacaccgtgcgccgcatgggcgaggctcagatg
aagaaccaccagcccatgggccagcagaattctggcattcagaagggtggcagaggcggt
ggtggtccgcctggaggccctgttgggcctcaggttggaggaaactatggaggaggaggc
cggggaggcggaggagctggtggtggaggtgggggtggagcaggtggtgggaattggggt
gggagaggtggggggatggggggtagaggtccaggtgggaatatgaggaatcggatgggt
ccggtcggtggccgaggaatcatgggaaatggagggatggtcgctccgccgccaccgatg
atgcatcctggcgggatgatggggcagggttttgatcccactggatatggtgcagctatg
ggaaggatgggtggtgggtttgggggattccccggtgggcctgggggttcaccgttccca
ggcctgatgcagccattcccacccgtggtcgctcctcatgtgaacccagccttctttggg
agaggaggtggtatgggtgctggtggggttgggatgtggccagacccaagcatgggtggc
tggggtggaggaggaggaggagaggagcaatcaagctatggggatgatgcagcatctgat
cagcactatggagaaggtgggagtcatggtaaagagaggccatcagagcgggaatggtct
ggggcacctgaaaggaggcgcgagagggagaaagatttgcccccaccaccagaactgcca
gagagaaggcaccgtgatgaaagggatatgggtcgtgagagggaaagagagagggacaga
ggagatagggatagggaaagagaccgggacagggagagggacagaggagatagggagagg
caccgggatgacagagatcgccatggtgattatcacagacacagggaccgtgagtccgat
cgtaatgaagactgggataggggaaggtcatctgggagaagaagcaggtcaagggaggtt
gatcactctaagcggcgacgaatgtcgcacgagtga
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