Lolium rigidum (rigid ryegrass): 124661677
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Entry
124661677 CDS
T09103
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog A-like isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03440
Homologous recombination
lrd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124661677
03460 Fanconi anemia pathway
124661677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lrd04121
]
124661677
03036 Chromosome and associated proteins [BR:
lrd03036
]
124661677
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124661677
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
124661677
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
124661677
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
124661677
FA (Fanconi anemia) pathway
Downstream FA components
124661677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA2
BRCA-2_OB1
BRCA-2_helical
BRCA-2_OB3
Motif
Other DBs
NCBI-GeneID:
124661677
NCBI-ProteinID:
XP_047055510
LinkDB
All DBs
Position
6:complement(319711484..319722194)
Genome browser
AA seq
1426 aa
AA seq
DB search
MDDSFRGALRNGSMTPVFQTGSGKAVSLGKDSIHKARAILQDVDSAAGAVQPMFRTGMGR
SVPVSRTSIDKATAVLEGKTIAEQGHFDKSVDGMEQFPLFQTGSGRAVSVSVASLQKAKS
VFKDNNTSGENAESFGRPDQPTMFQTDSRRPDVISGRSIERSRGAAKEGDTEKSGHWDTD
CQFPMFQTGLGKPVAVSRSSVQKAKAVLEGEKNDKTGHGDNCVSATNFQNETPRSVLMSS
SSIMSDRTVTPNGDSAMQEKNHEAGNHLPLFQTGLGRSIAVSKSSVKRASAVLEPRNIAK
ELEDEAHLDGGYDTPVFKTGVGRSILARESSGNKVPVILEAEEAVKSVNNDNGEAFVEDT
SFQAGIQMFVPQRRSSSHKASILLEQQNFGEKGYGDRGSQLPMFQTGSGKSVLISESSVQ
KARAVLEEEGNINKDTHKLLNMDQKFTVFTSPLKTSCARTVNISSVGVSRAASLLGLEEN
TLSTQFFGHVGDKLGTKITVEWENPDQRLDLASCTTENQVHKEPHWPFELSNNTVFDSGE
HSIRFSTAGGRSMAISSDALQRAKSLLGESDVVSTNKSTDNSLAAGCKDEITNSTVAPKG
GGSDLSKISRASGKPEIAAFSHQGMSDRKHTRSFGHAVPDTPATNENANRFHGGSHSISE
ISKIPKPSSRFLSEADNADDSKDKTQRLHMPAGVLVDITNFMGTHSGNIDHVANEKRRIG
GRNSPSPFKRPRSSRFIAPIITSKKSSAGIPKLPPSQTTSCRTKLSASYPFQHKRKTWKE
YFGGPPCFSFLTEHPTDEVKRMDAKGAEKYKFHDTDTGAEEFQKMLLACGASLTYATKEW
VNNHHKWIVWKLASLERCYPTKAAGKFLTVANVFDELKYRYDREVNNGHRSAIKKILEGN
ALPSLMMVLCISAVYSHPDVNNSKGEAGRRDENENSIDNKSLLAAKVNVPAQIELTDGWY
ALEASLDVALSEQLQKRKLFIGQKLRIWGASLCGWTGPVSFHEISGTVKLMLHVNGSYRA
RWDDPLGFCKHVGPPLAFKCIKASGGRVPRTLIGVARIYPVLYKERLSDGRSVVRSERME
RKALQLYHQRVSKIAEDIMSEQDENCGNSDDSEEGAKICKMLERAAEPEVMMAGMTSEQR
ISFSSYQAKQKEARQNEVAKKVENALEVAGLSSRDVTPFVKVRVTSLTKKISASKTINKE
GLITIWNPTEKQKADLVEGQIYLVTGLVPSSYCTGSLYLHARGSSTMWKPLASAQAADFE
PFFTPRKAVELSLFGEVPLASEFDIAGVVLHVGDVYLCSSQKRQWLFLTDGSKFTSAQHS
AEQDDCLLAVSFSCRIAGDDSVFFSHALSGNTVGFSNLVKRQKDQMSRIWVAEATESSTY
TISHEISKKSHLKEAAICAEKWASSSHSKIQQLKERVLCIIGDSGG
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atggatgattcatttagaggtgcgctgcgtaatggtagcatgaccccggtgttccaaact
ggatcagggaaagcggtctcgctgggaaaggactcaatccataaggcaagagctatttta
caagatgttgatagtgccgctggtgccgtacaaccaatgttccgtactggaatgggtagg
tcggttcctgtgagccggacctccattgataaggcaacggctgttttggagggaaaaaca
attgcagaacaaggtcattttgataagagtgtggacggcatggaacagtttccattgttc
caaactggttcaggaagagctgtatcagtcagtgtggcatctcttcagaaagcgaagtct
gtttttaaggataataatactagcggtgaaaatgcggagagttttggaaggcctgaccag
cctacaatgttccaaactgattccagaagaccagacgtgatcagcggaaggtccattgag
agatctagaggtgcggcaaaggagggagatacggaaaagagtggacattgggatactgac
tgccagttcccaatgttccaaactggattaggaaagcctgttgctgtgagccgcagctca
gttcagaaggcaaaggcagtattggagggagaaaaaaatgataaaaccggacatggagat
aattgtgtcagtgccacaaattttcaaaatgaaacgccaaggtctgttttgatgagtagc
agttcgatcatgagtgatagaactgtaacaccgaatggggatagtgcaatgcaagagaaa
aaccatgaggctggcaaccacttgccgttgtttcaaactgggctagggaggtcaattgct
gtaagtaagagctcagttaagagggcaagtgcagttctggagccgaggaatattgcaaag
gaattggaagatgaagctcatttagatggtggctatgatactccagtgttcaaaactgga
gtaggaagatctatcttagcaagagagagctctggaaacaaagtaccagttatcttagag
gccgaagaagcagtaaaaagtgtaaataatgacaatggagaagcctttgttgaagacaca
tcattccaagctggaatacagatgtttgtaccccaacgtagaagttcaagccataaggct
agtattctgttggagcaacaaaacttcggggagaaaggatatggagaccgtggaagtcaa
ctgccaatgtttcaaaccggatctggaaagtcggtcttgattagtgaaagttcagtgcag
aaggcaagggctgttctggaggaagaaggcaatataaacaaagatactcataagctcctt
aacatggaccaaaagtttactgtctttacttcacctctcaagacaagctgtgcaagaaca
gtaaatatatcttcagttggcgtgtctcgagctgcttctttgttgggcttggaagagaat
accctttcaacacaattttttggacatgtgggggataaactaggcacaaaaataactgtt
gagtgggaaaatccagaccagaggcttgatcttgcatcttgtacaacagaaaatcaagtg
cacaaggaaccacattggccgtttgaactttctaataacacagtctttgattctggtgag
cattcaatcagattcagtaccgcgggaggcagatcaatggctatttctagtgatgcactt
caacgtgcgaaaagtcttctgggtgaatcagatgtggtttcaacaaataagtcaacagat
aactctttggcagctggttgtaaagatgagataacaaattcaaccgtcgcccccaaaggc
ggtggatctgatttatcaaaaataagtagggccagtggaaaacctgaaatagcagcattt
tcccaccaaggaatgtctgacaggaagcacactagatcctttggacatgctgtacctgat
acccctgcgactaatgaaaatgctaataggtttcatggcgggagtcattcaatcagtgaa
atttcaaagattccaaagccttcttcgaggtttttatctgaagctgacaatgcggacgac
tctaaagataagacacaacgactccatatgccagctggagtgttggtggacattactaat
ttcatgggtacacattctggaaatattgaccatgttgctaatgagaagagaagaattggg
ggaagaaactctccgtctccatttaaacggccccgctcatccaggttcatcgcacctata
atcaccagcaaaaaatcctctgctggaatacccaagctgccaccatctcagaccacgtcc
tgtcgaacaaagctgtctgcatcttatccttttcaacataaaaggaaaacttggaaggag
tattttggcggtcctccctgcttcagttttttgacggaacatccaacagatgaagtgaag
cgcatggatgcgaaaggagctgagaagtacaagtttcatgatacggatactggtgcagaa
gaatttcagaagatgctgcttgcctgtggtgcttcattgacatacgcaacgaaagaatgg
gtgaacaatcaccataaatggatcgtgtggaaacttgcttcacttgagagatgctaccca
actaaagctgctggcaaattcttgacagttgctaatgtttttgatgagctgaaatatagg
tatgaccgagaagtgaacaatggccaccgatcagcaattaagaaaattttagaaggaaat
gctttgccatctttgatgatggtgctctgcatttcagctgtttactcccatcctgatgta
aataactccaagggtgaggctggcaggagagatgaaaatgagaacagcatcgacaataaa
agcttgttagctgctaaagtaaatgtgcctgcacaaattgaattaactgatggatggtat
gcactagaagcgtcattggatgtggcactttcagaacaactacagaaaagaaagcttttt
ataggacaaaagcttcggatatggggggcttctttgtgtggttggactgggcctgtgtca
tttcatgagatatcaggcactgtcaaattgatgctccatgtaaatggcagttatcgtgca
agatgggatgatcctttgggattttgcaagcatgttggacccccactggcgttcaagtgc
attaaagcttctggtggccgagtccctaggacactgattggagttgcaaggatatatcct
gttctgtataaggagaggttgtctgatggtcgttctgttgtgagatctgaaaggatggaa
aggaaagcgctacaactgtaccaccagagagtatctaagatcgcagaagacattatgtct
gaacaagatgaaaactgtggcaattccgatgatagtgaggaaggggcaaaaatttgcaaa
atgctagagcgggcagctgagcctgaagttatgatggcaggcatgacgtcagagcagagg
atatctttctcatcatatcaagcaaagcaaaaggaagctaggcaaaacgaagtggctaag
aaagttgagaacgctctggaagttgctggccttagttcaagagatgttacgccgtttgtg
aaagtgagggtgacaagccttactaaaaaaatctcggcttcaaaaaccatcaacaaggaa
gggctaataacaatttggaaccctactgagaagcaaaaagccgacctggtggagggacaa
atttacttagtcacaggactggtgccttcgtcctactgtactggtagtctttacttgcat
gctagaggatcatctaccatgtggaagccattagcgtcggcacaggctgcggattttgaa
ccatttttcaccccacgtaaggcggttgagctatcattgtttggtgaggtaccgcttgca
agtgaatttgacattgcaggcgtcgttttgcatgttggcgatgtttatttatgtagcagc
cagaaaagacagtggctctttttgacagatggatctaaatttacctcagcacagcactcc
gcagagcaagatgattgtcttctagcagttagcttttcttgccgaattgctggcgatgac
tctgtttttttcagtcacgccctttctggaaatacagttggtttcagtaatttggtcaag
cgacagaaagaccagatgagtcgcatatgggtagctgaggcaacagagagctctacctat
actatttctcacgagatctcaaaaaaatcgcatcttaaggaagctgccatttgtgccgaa
aaatgggcttcaagttctcattctaaaattcagcagctaaaggaaagggttttatgcatc
attggagatagtggtggctga
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integrated database retrieval system
