Lolium rigidum (rigid ryegrass): 124661876
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Entry
124661876 CDS
T09103
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124661876
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124661876
Spliceosome [BR:
lrd03041
]
Complex C
Other components
Complex C specific factors
124661876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_30
AAA_19
AAA_29
Cas3-like_C_2
AAA_7
T2SSE
nSTAND3
Motif
Other DBs
NCBI-GeneID:
124661876
NCBI-ProteinID:
XP_047055721
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All DBs
Position
6:353521850..353535345
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AA seq
699 aa
AA seq
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MSKFWRPGSEKPTASLVDDEEGGVLFLPTNTGASSSGFGYASLERLRQRLPVYKYRKAIL
YLVERHATTIVVGETGSGKSTQIPQYLMEAGWAEGGRLIGCTQPRRLAVQTVASRVAEEV
GVKLGEEVGYTIRFEDETNPGMTKIKFLTDGVLIREMMDDPLLTKYSVIMIDEAHERSIS
TDILLGLLKKIQRRRPELRLIISSATIEARSMSTFFSIRRKNSLLESADGVPNPEPAILS
VEGRGYTVETHYVEEPVTDYLQAAVNTVLIIHEKEPPGDILVFLTGQDDIEAALRLLNDE
IQHLGKHYFDLVILPLYSGLPRGDQDLIFAPTSKGKRKVVISTNIAETSLTLEGVVYVVD
SGFSKQKCYNPISDLESLVVAPISKASARQRAGRAGRVRPGKCFRLYTEEYYLNEMQSDG
IPEMQRSNLVSCIIQLKALGIDNILGFDWPASPSPEAMIRALEILFSLGILDEDAKLTVP
VGFQVAEMPLDPMISKMILSANDFGCSDEILTIAAFLSVQSVWVSMRGVKKEFDEAKLRF
AAAEGDHVTFLNIYKGFHHYGKSSQWCYKNFLNHQALKKVIEIRAQLVRVMKRFGIPLKS
CEGDMKAVRKAIIAGSFANSCHLEEYGQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVVYQ
SLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPDLH
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagttctggagaccggggtcggagaagccgaccgcctcgctcgtcgacgacgag
gagggtggcgtcctcttcctcccgaccaacaccggcgcttcctcctccgggtttgggtac
gcgtccttggagaggctgaggcagcggctgccggtctacaagtaccgcaaggccatcctc
tacctggtcgagcggcatgccaccaccatcgtcgtcggcgagaccggtagcggcaagtct
acgcagatcccccagtatcttatggaggctggttgggctgagggtggtcgacttataggt
tgcacccagccaagacgattagctgtccagactgttgcatcaagagtagctgaagaggtt
ggtgtgaaacttggtgaggaagtcggttatacaatccgttttgaggatgaaacaaacccg
ggtatgacaaagatcaaatttctcacagatggggtactgattagagaaatgatggacgat
cctcttttgaccaaatatagtgtaattatgatagatgaagctcatgaaagatccatttca
accgacatattgctgggactcttgaaaaagattcaacgccgtcggccagagttgcgtcta
atcatttcctctgcaacaattgaagcaagatcaatgtcaacctttttcagcatcaggcgg
aagaattccttgctcgagtctgctgatggtgtgcccaatccagaacctgctatactttct
gttgaaggtagagggtacacagtggaaactcactatgtggaagagcctgtcacagactac
ctgcaggctgctgtgaatactgttcttattattcacgaaaaggaacctccaggggatatt
ttggtgtttttaactggtcaggatgacatagaggctgctcttaggttgctaaatgatgaa
attcaacaccttggaaaacactatttcgatttggtgattttgcccttgtactccggcctt
ccgcggggagaccaagatctcatttttgctcctacttcaaaagggaaaaggaaagttgtg
atatcaaccaatattgctgagacgtcattgactctggagggtgtggtgtatgttgttgat
agtggattttctaagcagaagtgctataacccgatttctgacctcgaaagtttagttgtt
gcaccaatatccaaagcttctgcaaggcaacgagcaggcagagctggaagggtgcgacct
gggaaatgctttaggctttatacagaggaatattacctaaatgaaatgcagtcagatggc
attccagaaatgcaaaggtctaaccttgtttcctgcataatacagttaaaagcgctaggc
atagacaacattttgggatttgattggccagcttctccatcaccagaggcaatgattcgg
gctctggaaattctgttttcactaggaatccttgatgaagatgccaaactaacagttcca
gttggtttccaagtcgctgagatgcctttggatccgatgatctcaaaaatgatcttgtca
gccaatgattttggatgctctgatgagatattaactatagcagcatttctatctgttcag
tctgtgtgggtttctatgaggggagtgaagaaggaatttgatgaggccaaacttcggttt
gctgctgctgagggtgatcatgtaacattcctgaatatttacaaaggatttcaccattat
ggaaaatcgagtcagtggtgttacaagaactttttgaatcaccaagcactgaagaaggtt
attgaaatcagggcacagcttgtcagggtaatgaagaggtttggcataccgctgaaatcg
tgcgaaggagatatgaaggcagttagaaaagccattattgctggttcatttgctaattca
tgtcatctggaggaatatggccagaatggaatgtataaaactattaggacatcacaagaa
gtttacattcatccatcttccgtgctctttcgggttaatccaaagtgggtcgtgtaccag
tctcttgtttcaactgacaagcactatatgcgtaatgttattgccattgaaccatcatgg
cttactgaagctgcaccacatttctatcagttccggacacccaatccagatctgcactaa
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