Lolium rigidum (rigid ryegrass): 124662062
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Entry
124662062 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124662062
09122 Translation
03013 Nucleocytoplasmic transport
124662062
03015 mRNA surveillance pathway
124662062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124662062
03041 Spliceosome [BR:
lrd03041
]
124662062
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124662062
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124662062
Spliceosome [BR:
lrd03041
]
Complex C
Other components
EJC/TREX
124662062
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124662062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Dark_CARD
Motif
Other DBs
NCBI-GeneID:
124662062
NCBI-ProteinID:
XP_047055903
LinkDB
All DBs
Position
6:complement(177557403..177562553)
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AA seq
428 aa
AA seq
DB search
MGEAKDNEVYEDDLVDYEEEVENVVDDAAANASVDVAKKGYVGIHSSGFRDFLLKPELLR
AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICNEFERFSKYLPETKVAVFYGGVNIKNHKDLLKNECPHIVVGTPGRILA
LARDKDLPLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHEKQVMMFSATLSKESRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQIVIFVKSVS
RASELNRLLCECNFPAICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagccaaggacaacgaggtgtacgaggatgacctcgtcgactacgaggaggag
gtggagaacgtcgtggacgacgcagccgccaacgcctcggtcgacgtagccaagaagggg
tacgtgggaatccatagctcagggttcagggacttcctgctcaagccagagctgctccgc
gccatccaggactgcgggtttgagcatccttccgaagtgcaacatgaatgcatccctcaa
gctattctcggaatggatgtcatctgccaagcaaaatctgggatgggcaagactgctgtt
tttgtcctctcaactctccagcagattgatccggttgctggtcaagtagctgcactcgtt
ttgtgccatacaagggaattggcttaccagatttgcaatgaattcgagaggtttagcaag
tacctgccagaaacaaaagttgctgtcttctatggtggggttaacataaaaaaccacaag
gatttattgaagaatgaatgccctcatatcgtggttggcacacctggaaggatcctggct
ctggctagagacaaggaccttccgttgaagaatgtgaggcatttcattcttgatgaatgt
gacaagatgcttgattcacttgacatgcgtagagatgtccaggagatcttcaaaatgaca
ccccacgagaagcaagtgatgatgttttcagcaacactcagcaaggagagtcgcccggtt
tgcaagaaattcatgcaagatcccatggaaatttatgtcgatgacgaggctaaactgacc
cttcatggactagttcagcactacataaaactaagtgaggcggagaagaatcggaagttg
aatgatctcttagatgcactcgacttcaaccaaattgtgatatttgttaaaagtgttagt
agagcttcagaacttaacaggcttctctgtgaatgcaattttcctgcgatctgcatacat
tctggaatgacacaggaggagaggttgacccggtataagaacttcaaggaaggacacaag
aggattcttgtggctacagatttagttggcaggggaatagatattgagcgtgtcaatatt
gtcataaactatgacatgcctgattctgctgatacatacttgcacagggttggaagggct
ggacgttttggtaccaaggggcttgcaataacatttgtttcttctgcctctgactctgat
gttctcaatcaggtgcaagaaaggtttgaggttgacataaaggagctgcctgagcagatt
gacacttcgacatacatgccatcatga
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