Lolium rigidum (rigid ryegrass): 124662071
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Entry
124662071 CDS
T09103
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03022
Basal transcription factors
lrd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124662071
09124 Replication and repair
03420 Nucleotide excision repair
124662071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124662071
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124662071
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124662071
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124662071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
RsbRD_N
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
124662071
NCBI-ProteinID:
XP_047055915
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All DBs
Position
6:complement(345602120..345611324)
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AA seq
536 aa
AA seq
DB search
MGTLTIGAKYRTTLRDPGTSGVLSMSEDKFTFTPHDTCSLMVLNLDFRSIKGHKFNRVDC
SKPTQPLLNLLQNSDKGGGYIFEFDNVGDRELCRDFVARVFAEMERRMRLLREDSELRKL
HKKFVVSSILQESEFWAIRKNLLDDEANQALKQKPGVKNVMVADVRPSANGQALYFGTEL
VLLRDLWQTNKVPIRPTTEMILEIFLEKPAVHQAFLDYVPKKIKRVDPVFDMEVDAGDDY
IHLPDHGILCDGTKETTDTDIELARRTLSQDLNRHAAVVLDGRSTDIKSADTKTVAEALA
RSRKERPFSSVADDASHERSIKMARMTEIEDLQVPRSIPYATLCIKDPREFFDSQQANAL
RSLGENNGVRKAHSCSLSTDDAFRHLMDQISSVKLNCLIVQSDLALKVLNELNEGISQSR
RLSLKNLQDSLLGRLPRRTRDELMDHWMAIQELLHHFWSSYPITTAALRNKVQRVLGAMT
QIYQTLQDIKESALPDVRHEISRLVKPMTQALDAAFDHDLDQQQKSSKPGNSPSGF
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggggaccctgacgatcggtgccaagtacaggacgacgctcagggaccccggcaccagc
ggcgtcctcagcatgagtgaagataagttcacatttacccctcatgatacatgctcatta
atggtgctcaatctcgatttccgaagcatcaaaggtcacaagttcaacagagtagattgt
agcaaaccaacacaaccgttactgaatcttttacaaaattctgacaaggggggaggctat
atttttgagtttgacaatgttggtgaccgtgagttgtgtcgtgactttgtagctagggtt
tttgccgaaatggagcggcgaatgagattgcttcgagaagacagtgaactgcggaagtta
cataagaagtttgttgtttccagtattctgcaagagtctgaattttgggcgattagaaag
aatttacttgacgatgaagcaaatcaagcattgaaacaaaagccaggtgtcaaaaatgtg
atggtagctgatgttaggccatcagccaatggacaggccttgtattttggaacggagtta
gtacttctgcgtgatctttggcagacaaacaaagttcctatcagaccgacaaccgagatg
atccttgagatttttttggaaaagccagccgtgcatcaggcatttttggattatgtccca
aagaagataaaacgagttgatccagtatttgacatggaagtagatgcaggagatgactac
atccatctcccggatcatgggattctctgcgatggcaccaaagagacaactgatactgat
attgaattggctaggagaacactttctcaggatctgaatcggcatgctgctgtcgttctt
gacgggagatcaacagatatcaaatcagctgatacgaagactgttgctgaagcacttgca
aggtctaggaaggaaagaccttttagttctgttgctgatgatgctagtcatgagagatca
attaagatggcccgcatgactgagatagaggacctgcaagttccaagaagtataccatat
gcaacactttgtataaaggatcctcgagaatttttcgattctcagcaagcaaatgctctg
agatctttaggtgagaacaatggtgtaagaaaggctcacagctgcagcctgagcaccgat
gatgcattccgtcatttgatggatcaaatatcttctgtgaaattgaactgtctgattgtt
caatcagatttggctcttaaggttcttaatgaattgaatgaaggaatttcacaatcacga
aggcttagtcttaagaatctccaagacagtctccttggtcgtcttccacgccgaacacga
gatgaacttatggaccattggatggctatccaggagttgctgcaccatttttggtcatcg
tacccaataacaactgcagcccttagaaataaggttcaaagggttctaggtgcaatgaca
cagatatatcaaacgttgcaggatataaaggaatcagcactgcctgatgtaagacacgag
atatctcgacttgtaaagcccatgacccaggctctggatgctgccttcgaccatgatcta
gaccagcagcagaaatcttcaaagcctgggaacagccccagcgggttttga
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