Lolium rigidum (rigid ryegrass): 124663183
Help
Entry
124663183 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124663183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124663183
03009 Ribosome biogenesis [BR:
lrd03009
]
124663183
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124663183
Spliceosome [BR:
lrd03041
]
Complex A
U1 snRNP components
U1 related factors
124663183
Complex B
124663183
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Helicases
124663183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
124663183
NCBI-ProteinID:
XP_047056864
LinkDB
All DBs
Position
6:complement(264884245..264891976)
Genome browser
AA seq
1366 aa
AA seq
DB search
MAGAEAAADTSGPRFAPDDPTLPAPWKALMDGATLYYWNPETNVTQYDKPGAPALAPVPV
PGAFAQQPGQVAQQQQQPQQTAHQQQLQQTAQQPPFQYQPQQAQQVPYQQQQQQPPQQEQ
MPNQQGPQQPLAPQYPNMHPQQPTPYQHGPYMQPHQQQQQQQYSYQVGQQPQMQQNPYNQ
GQQQPIPQAANQGQQPTMPPGGYNQGQQQPTMPPGAYNQGQRPPMPQGAYGHGLRPPMPQ
SAYNQGQQPQMPQHASYNQGQQLQGIRMPQSQPQQSPGFHQPVQAPQVLQAPQSQGLQMS
PPQGQLQHGFPFTPQPQHGHVGAHISQLSHGQQSSEVKGDAGGLEGKQTGFSLPLSQQRG
QVPLPNQQLPYSHQRPEAHSQLNIHGVGGPAFPAKHHLGGLSPRETNNASFSSSPAHIHQ
GGLDTNYRQQLPSSHVAPNHIAPSPGRPPVGFKRGNSEDQFEKHEPHSSGRFDGINAPHQ
QPKLAALPPSQNHLQDTRNGPPYPQPDNFSGYNMAPPHLVQNPLNNGPFPVGALTRPPPG
TFPPPDFPSVASVDAYRQHHEVTAVGENVPPPFMTFEATGFPPEILREVHAAGFLNPTPI
QAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAFVHLSRCQNNPMLGPTVLVLAPTRELAS
QIQDEAIKFGRSSRVSCTCLYGGAPKGPQLRELERGADIVVATPGRLNDILEMRKISLHQ
ISLLVLDEADRMLDMGFEPQIRKIVDEIPRSRQTLMYTATWPKEVTKIAGDLLRDPVQIN
IGSIDELVANKSITQYVEMVPPMDKQHRLEQILRAEERGSKIIIFCSTKKMCDQLARGIG
RSFGAASIHGDKSQVERDQILNQFRTGRVPVLVATDVAARGLDIKDIRVVINYDFPTGIE
DYVHRIGRTGRAGATGVAYTFFSEQDWKYAGDLVKVLEGTSQEVPPALQQMAARGAPGGP
RNQAGGMSRWDGPGGGNRFESAAGGPGGYGGIREVPGAFGGRDGPGGFVDRGGPGGFVDL
DGPGRFAGREGPDGFGGRDGPGGFGGRMGPGGFGGREGPGGFGGREGPGGFGGRDGPGGF
GGREGPGPSGFSGRGGRGPDGFSRRGGGSPGRFGGSGGRGDSPGFGGRGRGDSSGFGGRG
RGDFSGGRGGRGRGFGGRGRSDRGPHDRFISDGRGRYDDRRGFGDKGRGRSYSRSPDRGR
SRGYDRRSDSRSLSSRSRSRSRSWSRSRSRSRSWSRSRSRSRSRSRSRDQGAGPERRPRA
RSGFDVPPPATEAGPVLAAPVPVPGPVADVAALKPGQSLADASDMSPMSPGGLVQVQEGG
PFMGGGDANVSSAQADQPSQGKDLVVPPSFSAAENFPGAAVQQDAP
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcagaggccgcagcggatacgtcgggcccgcggttcgcccccgacgacccg
acgctgccggcgccgtggaaggcgctgatggacggcgcgacgctctactactggaacccc
gagaccaacgtgactcagtatgacaagccgggcgcgcctgcgctggcgcctgtgccggtg
ccgggggcttttgcgcagcagcccgggcaggtggcgcagcagcagcagcagccccaacag
acggcgcaccagcagcagctccaacagacagcacagcagccaccgtttcagtatcaacct
cagcaagcacagcaggtgccctatcagcagcagcagcaacagccgccgcagcaagagcag
atgccgaaccagcaggggccgcagcagccactagctcctcagtatccaaacatgcatccg
cagcagccgacaccgtaccagcatggtccttacatgcagccccatcaacagcagcagcag
cagcaatactcgtatcaggtgggccagcagccgcaaatgcagcaaaatccctacaatcaa
ggtcagcagcagccgattccgcaagctgctaaccaagggcagcagccaacgatgccaccg
ggtggctacaaccaagggcagcagcagccgacgatgccgccgggcgcctacaatcaaggt
cagcgtccaccgatgcctcaaggtgcctacggtcatggtctgcggccgcccatgccacag
tctgcctacaatcagggccagcagccacagatgccgcagcatgcttcttacaatcaaggc
cagcagttgcagggaataaggatgcctcaaagtcagccgcaacaatcaccaggcttccat
caacctgtccaggcgccacaggtgctgcaagctccacagtctcaaggccttcaaatgtcc
cctccacagggccaactccagcatggcttcccattcacccctcagccacagcatggccat
gttggtgcccatatcagccagttgtcgcatgggcaacaaagtagcgaggtgaagggcgat
gcaggaggtcttgaaggaaagcagactggcttttcgttaccacttagtcagcagcgtggc
caagttcctcttccaaatcagcagttgccttatagtcatcaacgtcctgaggcccatagt
caactgaatattcatggagttggagggccagcatttcctgcaaagcaccatcttggtggg
ttatccccacgcgagactaacaacgctagtttttccagctcgcctgctcacatacatcaa
ggtggactggatacgaactaccggcaacaactgcctagcagccatgtagctcccaatcat
attgctccttcaccaggtcgacctccagtgggtttcaagaggggcaatagtgaagatcag
tttgaaaaacacgagcctcactcttctgggaggtttgatggaataaatgctccccatcaa
cagccaaaacttgccgctcttccgccttcccaaaatcacctgcaggatacgaggaacggc
ccaccatatcctcagcccgataactttagtggttataacatggcacctccacatttagta
caaaacccacttaacaatggtccgtttcctgtcggagctttaacgagaccaccacccgga
acatttcctcctccggatttccctagtgttgcttcagttgatgcatatcgtcagcaccat
gaagtcacggcagtgggtgagaatgttcctcctccgtttatgacatttgaggctactgga
ttccctccagagatactgagagaggtccacgctgctggcttcttaaaccccactccgatt
caggctcaaacatggcctgttgcacttcaaaaccgggatatagtagctattgccaagaca
ggatcagggaagacactgggataccttattcctgcttttgtacatctgagtagatgccaa
aacaatccaatgttgggtcctacagtgttggttttggcgcctacacgtgagcttgcttca
cagatacaagatgaagcaattaagtttggtcgatcatctagagtatcatgcacttgcctg
tatggaggagctccaaagggccctcagcttagagaacttgagcgtggagctgatattgtg
gttgctacaccgggacgactaaatgatattctggagatgaggaagataagcctccatcag
atttcattacttgtgcttgatgaagctgaccgcatgcttgacatgggttttgagccacaa
atacggaagattgtggatgagattcctcgtagtagacagactctgatgtacaccgccact
tggccaaaggaggttacaaaaatagctggtgatttattgagagatcctgtccagatcaat
attggaagcattgatgaacttgttgccaacaaatccatcacacagtatgtggagatggtt
ccaccaatggataagcaacaccgtttagagcagattcttagagctgaagaaaggggttca
aagatcatcatattttgctcaacaaagaaaatgtgtgaccagcttgctcgtggcattggt
cgtagttttggcgctgcaagcattcacggtgataaatcgcaggttgaaagggatcagatt
ctcaatcagtttcggactggtcgtgttccagtattagtagccaccgatgttgctgctcgt
ggacttgacatcaaagacattagggtggtgatcaattatgactttccaactgggatcgaa
gactatgtgcatcgcatagggcgcacaggaagggctggggctactggagttgcatacact
ttcttctctgagcaagattggaaatatgctggtgatttggtcaaagtcttggagggtact
agtcaggaggtacctccagcgctgcaacagatggctgcacggggtgcacccggaggtcca
agaaaccaggctggtggcatgagccgttgggatggtcctggtggtggtaatcgttttgaa
tctgccgctggcggccctggtggttacggtggaattagggaggtccctggggcctttggt
ggtcgggatggcccaggtggatttgttgatcggggtggcccaggtggatttgttgatcta
gatggccccggacgcttcgctggccgggagggccctgatggcttcggtggtcgggatggc
cctggtggctttggtggacgcatgggtcctggtggatttgggggacgggagggtcctggt
ggatttggtggacgggagggtcctggtggatttggtggacgtgatggtcctggaggattt
ggtggacgggagggtcctggacccagtggcttcagtgggagagggggccgtgggcctgat
ggctttagcaggcgaggtggaggaagtcctggtagatttggtggtagcggtggcaggggc
gattctcctggttttggtggacgtggtaggggtgattcttctggttttggtggacgaggc
cggggtgatttctctggtggacgtggtggaagagggcgtggatttggaggacgggggcgt
tctgaccgaggcccacatgatcgtttcatctcagatggacgtggacgatatgatgatcgt
cgaggatttggtgacaagggtcggggcaggagctacagccgtagcccagatagaggccgc
tcgcgaggctatgatagaagaagtgatagcaggagcctaagtagtaggagcagaagccgt
agcagaagctggtcacgcagcaggagccgcagcaggagttggtcacgtagccggagtcgc
agcaggagcaggagccggagccgtgatcagggtgcagggccagaacgcaggccacgggca
agatctggctttgatgtgccgccacctgcaactgaagcaggacctgttttagctgcgcct
gtacctgtacctggaccagtagctgatgttgctgcactcaaacctggacaatcgctcgcc
gatgcatctgatatgtcacctatgtcgcctggtggcttggtccaggtccaggagggtgga
ccattcatgggcgggggcgatgccaacgtcagcagcgcgcaagctgaccagccttcccaa
gggaaagatcttgtagtaccgccaagcttttctgcagctgaaaattttccaggtgctgca
gttcagcaggatgccccatga
DBGET
integrated database retrieval system
