Lolium rigidum (rigid ryegrass): 124663262
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Entry
124663262 CDS
T09103
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03082
ATP-dependent chromatin remodeling
lrd03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124663262
03083 Polycomb repressive complex
124663262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lrd03036
]
124663262
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
124663262
Histone modification proteins
HAT complexes
HATB complex
124663262
HDAC complexes
Sin3A-HDAC complex
124663262
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
124663262
PRC2.2
124663262
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
124663262
Heterochromatin formation proteins
Other heterochromatin formation proteins
124663262
Chromatin remodeling factors
NuRD complex
124663262
NuRF complex
124663262
NuRF complex (fruit fly)
124663262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR55
EIF3I
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
124663262
NCBI-ProteinID:
XP_047056938
LinkDB
All DBs
Position
6:122551227..122558673
Genome browser
AA seq
456 aa
AA seq
DB search
MKEKGGSRAAVDERYAQWKSLIPVLYDWFANHNLVWPSLSCRWGPQFEQATYKNRQRLYL
SEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIREL
PQNSRIIATHTDSPDVLIWDVEAQPNRHAVLGATDSRPDLILRGHEENAEFALAMCPAEP
YVLSGGKDKSVVWWSIQDHISGLGDSSKSETSPGASGSKHSKTANEKDSPKVDPRGVFHG
HDSTVEDVQFCPSSAQEFCSVGDDACLILWDARTGTSPAVKVEKAHGGDVHCVDWNLHDV
NYILTGSADNSVRMWDRRNLGPGGGAGSPIHKFEGHKAAVLCVQWSPDKASVFGSSAEDG
FLNVWDHDKVGKKKNPNSPGGLFFQHAGHRDKIVDFHWNSSDPWTIVSVSDDGESTGGGG
TLQIWRMSDLIYRPEEEVLSELENFKSHLASCTPRA
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagaagggcgggtcgagggcggcggtggacgagcggtacgcgcagtggaagtcg
ctcatccccgtcctctacgactggttcgccaaccacaacctcgtctggccgtccctctcc
tgccggtggggtcctcagttcgagcaggctacctataagaaccgtcagcgcctttacctg
tcagagcagaccgatggaagtgtccctaataccctggtcattgcaaactgtgaagttgtc
aagccacgggttgcagctgcagaacacatctcacagttcaatgaggaagcacgatcacct
tttgtaaagaagtacaagactatcattcatcctggagaggtcaaccgcatcagggagctt
ccacagaacagcaggatcatcgccactcatacggacagtccagatgtgcttatttgggat
gttgaggctcagccaaatagacatgccgtcttaggagcaactgattctcgccctgatttg
atattaagaggacatgaggaaaatgccgagtttgcccttgccatgtgtccagcggaacca
tatgtgctctcaggaggaaaggacaagtctgtggtctggtggagcatccaagatcacata
tctggacttggagattcttcaaaaagtgagacttccccaggggcatcaggcagcaagcat
agtaaaactgcaaacgaaaaggatagtcctaaagttgatcctcgaggtgtattccacggg
catgatagcactgttgaagatgttcagttctgcccttcaagtgcacaggaattctgtagt
gtgggtgatgatgcttgtcttattctttgggatgctcggactggtaccagcccagctgtt
aaggttgagaaagctcatggtggagatgttcattgtgtcgattggaatctccatgatgtt
aattatatcttaactggttctgctgataactcagtccgtatgtgggaccgccgaaatttg
ggtcctggaggaggagctggttctccaattcacaaattcgagggccataaagctgctgtg
ctttgtgttcagtggtctcctgacaaagcatctgtgtttggaagctctgcagaagatggt
ttcttaaacgtgtgggatcacgacaaggttgggaagaagaaaaatcccaattcacctggc
ggacttttcttccaacatgcaggtcatagggacaagattgtagacttccactggaactca
tcagatccttggaccattgtgagtgtttctgatgatggcgagagcactggtggaggtgga
actttgcagatatggcgtatgagtgatctgatctaccgcccggaggaagaggttctttca
gagctggagaacttcaagtctcacttggccagctgcaccccaagggcttga
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