Lolium rigidum (rigid ryegrass): 124663792
Help
Entry
124663792 CDS
T09103
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124663792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124663792
03009 Ribosome biogenesis [BR:
lrd03009
]
124663792
04131 Membrane trafficking [BR:
lrd04131
]
124663792
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrd04147
]
124663792
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124663792
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
124663792
Membrane trafficking [BR:
lrd04131
]
SNARE
SNARE associated proteins
Others
124663792
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124663792
Exosome [BR:
lrd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124663792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_14
AAA_33
AAA_5
AAA_22
TIP49
CDC48_2
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
Parvo_NS1
ABC_tran
AAA_18
AAA_24
ATPase_2
IstB_IS21
AAA_7
Viral_helicase1
NB-ARC
TsaE
Zeta_toxin
NACHT
Vps4_C
DUF815
Motif
Other DBs
NCBI-GeneID:
124663792
NCBI-ProteinID:
XP_047057410
LinkDB
All DBs
Position
6:complement(107217293..107219650)
Genome browser
AA seq
785 aa
AA seq
DB search
MASASSSKKAANRLVVEEATTDDNSICNLNPTTMDELSIYKGDIVLLKGKRRHATVCIVV
PDETCEEHKLRLNKVARSNLRVRIADVVSVHLCPDAKYGRRVHVLPVDDTIEGITGNLFE
AYLKPYFADAYRPVHKGDLFLVRGGMRSVEFKVIEIDPAVDYCIMAADTEIFCDGEPVKR
EDEDRLDGIGYDDVGGMRKQMNQIRELVELPLRHPQIFKSLGVKPPKGILLYGPPGSGKT
LIARAVANETGAFFLCINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK
REKTHGEVERRIVSQLLTLMDGMKARAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP
DEIGRLEVLRIHTKNMKLSEDVNLEVVAKDTHGYVGADLAALCTEAALQCIREKMDVIDL
EDDTIDAEILNSMAVTNDHLKTALVGTNPSALRETVVEVPNVSWSDVGGLDGVKRELQET
VQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF
GESEANVREIFDKARQSAPCVLFFDELDSIAMQRGGNVGDAGGAADRVLNQLLTEMDGMN
AKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRHQIFKACLRKSPVAKDVDL
GALARFTTGFSGADITEICQRACKYAIREDIEKDIERQRSGMEVDGGQEDEVAEIKAAHF
EESMKYARRSVSDGDIRKYQSFAQTLQQSRGFGTEFRFPAQAQAAEASPNAFDTSLADDE
DDLYN
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgcgtcgtcgtcgaagaaggcggcgaaccggctggtggtggaggaggcgacc
acggacgataactccatctgcaacctaaacccgaccactatggacgagctctccatctac
aagggcgacatcgtgctgctcaagggcaagcgtcgccacgccaccgtctgcatcgtcgtc
cccgacgagacctgcgaggagcacaagctcaggctcaacaaggtggcccgctccaacctc
agggtgcgcatcgccgacgtcgtgtccgtgcacctctgccccgacgccaagtacggcagg
cgcgtgcacgtcctccccgtcgacgacaccatcgagggcatcacgggcaacctcttcgag
gcctacctcaagccctacttcgcggacgcctaccgcccggtgcacaagggcgacctcttc
ctcgtccgcggcggcatgcggagcgtcgagttcaaggtcatcgagatcgaccctgccgtc
gactactgcatcatggcggcggacacggagatcttctgcgacggcgagccggtgaagagg
gaggacgaggacaggctcgacggcatcggctatgacgacgtgggtggcatgcgtaagcag
atgaatcagatcagggagctggttgagctgccgcttaggcatccgcagattttcaagtct
ctcggcgtgaagcctcccaagggcatcctcttgtacggccctcccggctccggcaagacg
ctgatcgctcgtgcggtggcaaacgagacgggggccttcttcttgtgcatcaatggcccc
gagatcatgtccaagatggctggagagagcgagagcaacttgaggaaggcgtttgaggag
gccgagaagaacgctccgtccatcatcttcatcgatgagatcgactccattgctccaaag
agggagaagacacacggtgaggtggagaggcgcatcgtgtcccagctgctgacgctcatg
gacgggatgaaggcacgagcacacgtcatcgtaatgggcgccacaaatcgccccaacagc
atcgatcctgctctcaggcgtttcgggaggttcgaccgtgagatcgatattggcgtgcca
gacgagattgggcgccttgaggtactgcgcatacacacaaaaaacatgaagctctctgaa
gacgtcaaccttgaggttgtcgccaaggacactcacgggtatgttggtgccgacttggcc
gcgctctgcaccgaggcggcgctccagtgcatcagggagaagatggatgtgattgacctc
gaggacgacacaatcgacgccgagatcctaaactccatggctgtcaccaacgaccacctc
aaaactgctctcgtcggcacgaatccttcggcgcttcgtgagaccgtcgtggaggtgccc
aacgtcagctggagcgacgtcggcggtctcgacggcgtcaagagggagctgcaggagacc
gtccagtaccccgtggagcaccccgagaagtttgagaagttcggcatgtcgccttccaag
ggcgtcctgttctacgggccaccaggctgcggcaagacgctgctggccaaggcgatcgcc
aacgagtgccaagccaacttcatcagtatcaaggggcccgagctgctcaccatgtggttc
ggcgagagcgaggccaacgtccgtgagatcttcgacaaggcgaggcagtcagcgccgtgc
gtgctcttcttcgacgagctcgactcgatcgcgatgcagcgcggcggcaacgtgggagac
gccggtggcgcggcggacagggtcctgaaccagctgctgaccgagatggatggcatgaac
gccaagaagacggtgttcatcatcggtgccaccaatagaccagacatcatcgactcagcg
ctgctccgtcccggccgcctcgaccagctcatctacatccccttgccggacgaggcctcg
cgacaccagatcttcaaggcttgcctcaggaagtctcccgtggccaaggacgtcgacctc
ggcgcgctcgcaaggttcacgacaggtttcagtggcgccgacatcaccgagatttgccag
agggcgtgcaagtatgccatcagggaagacattgagaaggacatcgagaggcagaggtca
ggcatggaggtggacggcgggcaggaagatgaagtggctgagatcaaagcggcgcacttc
gaagagtcgatgaagtacgcgaggaggagcgtgagcgacggtgacatcaggaagtaccag
tcctttgctcaaacgctgcagcagtccaggggcttcggcaccgagttccgcttcccagcg
caggcacaagcggcagaagcttctcccaatgccttcgacacctcgctggcagacgatgag
gatgatctctacaactaa
DBGET
integrated database retrieval system
