Lolium rigidum (rigid ryegrass): 124663927
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Entry
124663927 CDS
T09103
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124663927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124663927
03009 Ribosome biogenesis [BR:
lrd03009
]
124663927
04131 Membrane trafficking [BR:
lrd04131
]
124663927
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrd04147
]
124663927
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124663927
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
124663927
Membrane trafficking [BR:
lrd04131
]
SNARE
SNARE associated proteins
Others
124663927
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124663927
Exosome [BR:
lrd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124663927
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_33
AAA_5
AAA_14
TIP49
AAA_22
NPHP3_N
CDC48_2
AAA_17
RNA_helicase
nSTAND3
Mg_chelatase
AAA_28
Parvo_NS1
AAA_18
ABC_tran
ATPase_2
Viral_helicase1
nSTAND_NTPase5
AAA_7
NB-ARC
TsaE
IstB_IS21
Vps4_C
Zeta_toxin
NACHT
DUF815
AAA_24
ResIII
ARC_lid
Motif
Other DBs
NCBI-GeneID:
124663927
NCBI-ProteinID:
XP_047057513
LinkDB
All DBs
Position
6:complement(248828164..248830527)
Genome browser
AA seq
787 aa
AA seq
DB search
MSAAPSKKAANRLVVEEATDDDNSMCKLHPATMESLSIFTGDVVLLKGKRRRSTLCIAIA
DDTCEEHKMKINKVVRSNLRVRVADVVSVHQCHDARHGTRVHVLPVDDTVEGITGSLFES
YLKPYFMDAYRPVRKGDLFLVRGGMRSVEFKVMDIDQGEDLEYCIVAADTEIFCEGEPVK
REDEERLDDVGYDDVGGMRKQMTQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK
TLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFDEAEKNAPSIIFIDEIDSIAP
NREKTHGEVERRIVSQLLTLMDGMKARAHVIVMGATNRPNSIDPALRRFGRFDREIDIGV
PDEVGRLEVLRIHTKNMKLDVDVNLEVVAKDTHGYVGADLAALCTEAALQCIREKMGVID
LEDDTIDAEILNSMAVTNDHLKTALVGTNPSALRETVVEVPNVSWNDIGGLDGVKRELQE
TVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW
FGESEANVREIFDKARQSAPCILFFDELDSIAMQRGRSVGDAGGAADRVLNQLLTEMDGM
NAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRHQIFKACLRKSPVAKDVD
LGALARFTAGFSGADITEICQRACKYAIREDIEKDMERQRLGKDSMEVDCVQEAEEVAEI
KAAHFEESMKYARRSVSDGDIRKYQAFAQTLQQSRGFGTEFRFPAQPQAAEAATNTLAAA
DEDDLYN
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgcgccgtcgaagaaggccgcgaaccggctggtggttgaggaggcgaccgac
gacgacaactccatgtgcaagctccacccggccaccatggagagcctctcgatattcact
ggcgacgtcgtgctgctcaagggcaagcgccgccgcagcacgctctgcatcgccatcgcc
gacgacacatgcgaggagcacaagatgaagatcaacaaggtggtccgctccaacctgcgc
gtccgcgtcgccgacgtcgtgtccgtgcaccagtgccacgacgccaggcacgggacgcgc
gtgcacgtcctgccggtggacgacaccgtcgagggcatcaccggcagcctcttcgaatcg
tacctcaagccctacttcatggacgcctaccggcccgtccgcaagggcgacctcttcctc
gtgcgcggcggcatgcggagcgtcgagttcaaggtcatggacatcgatcagggcgaggac
ctcgagtactgcattgtggctgccgacacggagatcttctgtgagggagagcccgtgaag
agggaggacgaggagaggctcgatgacgtcggctacgatgacgtgggtggtatgcgcaag
cagatgacgcagataagggagttggtcgagctgccgctcaggcacccgcagctcttcaag
tccatcggcgtcaagcctcccaagggcatccttctctacggccctcccggctccggcaag
accctcatcgcccgcgccgtggccaacgagaccggggccttcttcttctgcatcaacggc
ccggagatcatgtccaagatggccggagagagcgagagcaacctcaggaaggcattcgac
gaggcggagaagaacgcgccctccatcatcttcattgacgagatcgactccatcgctccc
aacagggagaagacccacggcgaggtcgagaggcgtatcgtctcccagctgctcaccttg
atggacggcatgaaggcccgcgcgcacgtcatcgttatgggcgccacgaaccgcccgaac
agcatcgaccctgccctccggcgctttggtaggttcgatcgcgagatcgacattggcgta
ccggatgaggtcggccgcctcgaggtcctccgcatccacaccaagaatatgaagctggat
gttgacgtcaacttggaggtggttgccaaggatacgcacggctacgtcggtgccgacttg
gccgcgctctgcaccgaggcggcactgcaatgcatcagggagaagatgggcgtgatcgac
ctagaggacgacaccatcgacgcggagatcttgaactccatggccgtcaccaatgaccac
cttaaaacggctctcgtcggcacgaatccatctgcacttcgggagaccgtcgtcgaggtg
cccaacgtcagctggaacgacatcggcggcctcgacggcgtcaagagggagctccaagag
accgtccagtacccagtggaacatccggagaagtttgagaagttcggcatgtcgccttcc
aagggtgtcctcttctacgggccaccggggtgcggcaaaaccttgctggccaaggcgatc
gctaatgaatgccaggccaacttcatcagcatcaagggacctgagctgctcacgatgtgg
tttggcgagagcgaggccaacgttcgtgagatctttgacaaggcgcgccagtctgcaccg
tgcatcctgttcttcgacgagctcgattccatcgcgatgcaaaggggccggagcgtgggc
gacgccggcggcgcggcggacagggttctgaaccagctgctgaccgaaatggacggcatg
aacgccaagaagacggtgttcatcattggcgccaccaaccggcctgacatcatcgactcg
gcgctgctccggcccggccgcctggaccagctcatctacatccccttgcccgacgaggcc
tcaaggcaccagatcttcaaggcctgtctcaggaagtctcccgtggccaaggacgtcgac
ctcggtgcgctcgcgaggttcacggcagggttcagtggcgccgacatcacagagatctgc
cagagggcgtgcaagtatgcgatcagggaagacatcgaaaaggacatggagaggcagagg
ctggggaaagatagcatggaggtagactgtgtgcaggaagcagaggaggtggctgagatc
aaggcagctcactttgaggagtcaatgaagtatgcaaggaggagcgtgagcgacggcgac
atcaggaagtaccaggcctttgctcagacgctccagcagtccagagggttcggcacggag
ttccgcttcccggcgcagccacaggcggcagaagctgctaccaacaccttggcggcagct
gatgaagacgatctgtacaattga
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