Lolium rigidum (rigid ryegrass): 124664861
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Entry
124664861 CDS
T09103
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124664861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124664861
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124664861
Spliceosome [BR:
lrd03041
]
Complex C
Other components
Step II factors
124664861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
RRM_DEAH11
KH_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
IBR_1
zf-RING_UBOX
HA2_N
AAA_22
RRM_1
AAA_19
zf-C3HC4
ResIII
Arc_MA
ABC_tran
KH_SLS1_1
AAA_29
gp37_trimer
Motif
Other DBs
NCBI-GeneID:
124664861
NCBI-ProteinID:
XP_047058242
LinkDB
All DBs
Position
6:336486397..336500709
Genome browser
AA seq
1873 aa
AA seq
DB search
MASHLTTELEVDGMVLHTYCCCCEDELLLRTSLYCCCCCIRVDDGNRWGFPTRCRGRGSG
GWYSSVSARHSEAAAGATATERFICSIALSPVRPLQKRSARHRQIHRPNLRKPSERTHAA
AAAMRPSHDRRPYRPPDRGSPPPHRYHNQHHRQPPPHARQYAVILLRAAPDSSTPSATEI
DALVAGLQSPPPDSLSVSSSGRQAARLLFRSLPKAAEAARELWSLRLDGLHFINPHLPDA
PLAAHAYPLLASLFASHASRLLDSDLVSRCAARSAELAVSIQSVKHRLRAHNKLRDFDQL
DLQKRTLEAEKDLVDDKIAEYKAAMNSIRRAMLCGTDGEEEVDGEGVDVFGIIGEDEDVD
FVRLHMMMLRECRRLNEGLPIYAYRRKILDHIFNNQVMILIGETGSGKSTQLVQFLADSG
LAANGSIVCTQPRKVAGLSLAHRVDEESKGCYKDNFVSSYSSFFNSQDLSSKIIFCTDSC
LLHHYMDDTDLSGISYIIVDEAHERSLNTDLLLALIKKKLLDRLDLRLIIMSATADANRL
AEYFYGCQTFHVKGRNFPVEIKYVPDLSVEASLNTGLNSPRGACATASYVDDVIRQVSII
HKGEDEGAILAFLTSQLEVEWACENFSDARAVVLPMHGKLSPVEQSRVFKSFPGKRKIIF
CTNIAETSLTIKEVKYVVDSGLVKESRFVPTSGLNVLKVNWISQSSANQRAGRAGRTGAG
KCYRLYSQSDFSMMEVHQEPEIRKVHLGTAVLRILALGVKDAQNFEFVDAPNPEAINIAV
KNLEQLGAIKCKYNCFELTDIGRHLVKLGIEPRLGKIMLDCFSFGLRKEGVVLAAVMANS
SSIFCRVGTDEEKHKADLQKVRLCHQDGDLFTLLAVYKKWEDGHENRNTWCWQNSINAKT
MRRCQETISELEKCLKHELNIIIPSYWCWNPEAPTVHDKLLKRIILSSLAGNLAMFLGHE
RSGYQVISTDQVVNLHPSCSLLNYGIKPEWVVFAEILSVPNQYLVCVTAVDHDALCTIHP
MSFIQQLEKQKLQIKVISGLGNNLLGKFCGKSGQNKQKIVSRLQEECRDDRLTVEINFKN
NEVILFATEQHMEKVFCIVNNALECEGKMMRNECLERSLFPERCGSSPIALFGSGAEIKH
LELEKRYLTVEVLHQNAHDINEMELICLVDSLVSGVVNIHKFARNFRIASDETKWGKFTF
LKPENAEDAVSKLNGVEFHGSSLKVVPVYSSDNQGLPFPAVRAKLCWPRKPSKGLALVTC
ASGEAQSVANDCFALGIDGRYVNCRVSTKEENCVFVERIPLHVTEPELYDAFRSTTTRRI
LNIRLLRVKGAIAGPSVSVCEEALIREISSFMRNKSFPGQNFRVEVFPPEENDSMMRATL
TFDGSLYQEAARALDHLQGSILPCCQPWQIIECKHVFHSTLSCPVRVYNVISLEVASLLE
SFRSQKGVSYSFEKTENGIFRVKLTANATKTIADLRRPLEILMKGKTINHPDLTLSAVHM
LLSRDGVTHLKSIEQETGTYIMYDRRSLNIKVFGNQHHMAEAEEKLVHVLLQLLEKRPLE
IFLRGHNLPPDLMKKTIENFGVDLEGFKKEMPTVKVDLHKHRHLLKVWGSKEDKRRVEGM
VSELIISVKSNALVQLPSENVGGSKEDKQRVDDNELSNDTCPICLCETEDPFKLETCAHV
FCRACLVDQCESATKSHDGFPLCCLRTGCKKPFLIVDLKHLVSKEKMDDLFRASLRAFVA
SRAGMYRFCPTPDCRSIYEVAAPDAEAKPFVCGACYVEICTKCHLEYHPFISCEAYKEYK
EDPDATLREWRKGKENVKNCSSCGYTIEKADGCNHVECRCGSHICWACLANFRSSEECYG
HLRSVHQSFVDIV
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcacctgacgacggaactggaagtcgatggtatggtgctgcacacgtactgc
tgctgctgcgaggacgagctgctgctgaggacgagcctgtactgctgctgctgctgcatc
cgggtcgacgacggcaaccggtggggcttccctactcgctgcagaggacggggcagcggt
ggctggtactcctccgtcagcgcacgacacagcgaggcggcggccggggcgacggcgact
gaacggtttatttgctctatcgccctgtcccctgttcgtcctttgcagaagcgatctgct
cgacaccggcaaatccatcgcccaaacctccgcaaaccctcggagcgcacgcacgccgcc
gccgccgccatgcgtccatctcacgaccgccgcccgtaccgcccgccggatcggggctcc
ccgcctccccaccgctaccacaaccagcaccaccgccagccgcccccgcacgcgcgccag
tacgccgtgatcctcctccgcgcggcgcccgactcctccaccccgtccgccacggagatc
gacgcgctcgtcgccggcctccagtcgccgccccccgacagcctctccgtctcctcctcc
ggccgccaggccgcgcgcctcctcttccgctccctccccaaagccgcggaggccgcgcgc
gagctctggtcgctccgcctcgacggcctccacttcatcaacccgcacctccccgacgcg
cccctcgccgcccacgcctacccgctcctcgcctccctcttcgcctcccacgcgtcccgc
ctcctcgactccgacctcgtctcccgctgcgccgcccgctccgccgagctcgcagtctcc
atccagtccgtgaaacaccgcctgcgcgcccacaataagctccgcgacttcgatcagctc
gatctccagaagagaacactggaggctgagaaggacttggtggatgacaaaattgcagag
tacaaagcagccatgaattcgatacggcgcgccatgttatgtgggacggatggcgaggaa
gaggtggatggggagggggtggatgtgtttgggattatcggggaagacgaggatgtggac
tttgtgaggctgcacatgatgatgctgcgcgagtgcaggaggctcaacgaggggctaccc
atctacgcttaccgcagaaaaattctcgatcacattttcaataaccaggttatgatctta
attggggaaactggttctgggaaaagcacacaactagtccagtttcttgctgattcaggt
cttgctgcaaatggctcaattgtctgcacgcaaccgcggaaagttgctggtctgtcgctg
gcacatagagtagatgaagaaagcaagggctgctacaaggacaatttcgtgtcatcatat
tcaagcttttttaattcccaagatttaagctctaagatcatattttgcacagatagttgt
ctcttacatcactatatggacgatacagacctgagtggcatttcatatatcattgttgat
gaagctcatgaaagaagcttgaacactgatcttctcttagctttgatcaagaagaagctg
cttgataggttggatttgcgactcattataatgtctgccactgctgacgctaatagactt
gctgaatatttttatggctgtcaaactttccatgtgaaagggagaaattttcctgttgaa
attaaatatgtgccagatttgtcagtggaggcttctttgaatactgggctaaattctccg
cgtggtgcttgtgccactgcttcttatgtcgatgatgttataagacaggtaagcattatt
cacaagggtgaagacgagggtgccatccttgctttcttgacatctcaactggaagttgaa
tgggcttgtgaaaatttcagtgatgccagggctgtggttcttcctatgcatggaaagctt
tcccctgtagaacagagtcgtgtttttaaaagctttcctggaaagagaaaaattatcttc
tgcacgaatatagctgaaacatcactgactataaaagaagtgaagtatgttgttgattct
ggtctggtcaaggagagcagatttgttcctaccagcggcctcaatgtcctgaaagtaaat
tggatttcccaaagctcagctaatcaacgtgctggccgggcaggtcgaacgggagcaggg
aagtgttataggctttactcccaatctgacttcagtatgatggaagtgcatcaagaacct
gaaatccgtaaagttcatctcggcactgctgttctgagaatacttgctttgggtgttaaa
gatgcacaaaattttgagtttgttgatgccccaaatccagaagctatcaatatagctgtg
aagaaccttgaacagttgggtgctatcaaatgtaaatataattgctttgagctgactgat
attggacgccacttggtaaaattgggaattgagccaaggcttggaaaaattatgcttgat
tgcttcagttttggtttgaggaaggaaggtgttgttttagctgctgttatggcaaattct
agcagtatattttgtagagtgggcactgatgaggagaaacataaagctgaccttcagaag
gtccgattgtgtcaccaagatggagatctgttcactctactcgctgtttataagaaatgg
gaggatggacatgaaaacaggaatacgtggtgctggcagaacagcatcaacgccaagacc
atgaggaggtgccaggaaactatatcagaacttgaaaagtgcctaaagcatgagctgaac
attattatcccaagttattggtgttggaatcctgaggctcccactgtgcatgataagttg
ctgaagagaattatcctgtcatctcttgcaggtaatcttgctatgtttttaggacatgaa
aggtctggttaccaggtgatttctacagatcaggttgtgaaccttcatccttcatgctca
ttgctcaattatggcatcaagccagagtgggtggtgtttgcagaaatcttgtcagtgcca
aatcaatatttggtatgcgtgactgctgttgatcatgatgccttgtgtacaattcaccca
atgtctttcattcagcaactggagaaacagaaattgcagataaaggtgattagcgggctt
ggtaataacctgctaggaaaattttgtggcaaatctggccaaaataagcagaagattgtc
tcacgtctccaggaagaatgcagggatgaccgattaactgttgaaattaacttcaaaaat
aatgaggttattctgtttgctacagaacagcacatggaaaaggtcttttgcattgttaac
aatgctttggaatgtgaaggtaagatgatgcggaatgaatgccttgagagaagtttattt
cctgagaggtgtggcagttctcccattgcactatttggctcaggtgctgaaatcaagcat
ttggaacttgagaagagatatctgacagtagaggttctgcatcaaaatgcccatgacatc
aatgagatggagctcatttgtctggtggatagtcttgtctccggtgttgttaatattcat
aaattcgccagaaatttccgcatagcttcagatgaaactaaatggggtaaatttacattc
ctcaaacctgaaaatgctgaagatgctgtctcaaaattgaacggagtagagtttcatggt
tcttccctaaaagtagttcctgtgtattcttccgataatcaaggattaccatttcctgca
gtaagagctaaattatgttggccacgtaagccaagcaagggccttgcacttgtaacatgt
gccagcggggaagctcaatctgttgcaaatgactgctttgccctaggaattgatggaagg
tatgtcaattgtagggttagtacgaaggaggagaactgtgtctttgtcgaaagaattcca
ttgcatgtcacggagccagaactgtatgatgctttccgtagcacaacaacaaggagaatc
cttaatatccgtttactcagggtcaagggagccatagctggcccctctgtttcagtatgt
gaagaagcattgattagagaaatttcttcattcatgcgaaacaagagttttcctggacaa
aatttccgtgttgaggtgttccctccagaggaaaatgattcaatgatgagagcaacttta
acttttgatggaagtctttatcaagaagctgcaagagcactggaccatctgcaaggaagt
attcttccttgttgtcaaccttggcagatcatagaatgcaagcatgtatttcatagcact
ctgtcctgtccggtacgtgtttacaatgttatcagcctggaagttgcttctctgcttgag
agtttccgaagccaaaaaggtgtgtcttacagttttgagaagactgagaatggtattttt
cgagtaaagctcactgcaaatgccaccaaaacaatagcagatttgagaaggccgcttgaa
attttgatgaaagggaaaaccataaaccacccagatctgacactaagtgcagttcatatg
ctcttgtcccgtgatggtgtaacacatttgaaatcaattgaacaagagactggtacttac
attatgtatgacaggcgaagtctaaatattaaagtctttggaaaccaacatcatatggct
gaagcagaggagaaattagttcatgtacttctgcagctccttgagaagaggcctcttgaa
atttttcttcgtgggcataacctccctccagacttgatgaagaaaacaattgaaaatttt
ggagttgatctggaaggattcaagaaagagatgcccacagtaaaggttgacttacataag
caccgccatttactcaaagtttggggcagtaaagaggacaagcgacgagtggaagggatg
gtctccgagttgataatctctgttaaaagcaatgctctggttcaacttccatcagagaat
gttggaggcagtaaagaagataaacaaagggtggatgacaatgagttgtcaaatgataca
tgccctatttgcttgtgtgagactgaagatccttttaagcttgaaacatgtgcgcatgtg
ttttgtcgtgcttgcttggtggaccagtgtgaatctgccacaaaatcacatgatgggttc
cctctttgttgcctcagaaccgggtgcaagaagcccttcctcattgttgacctgaagcac
cttgtgtcgaaagagaagatggatgacctatttagagcttccctgagggcatttgttgca
tccagggcaggaatgtaccgtttctgcccaacaccggattgccggtcgatctacgaggtg
gcagctccagatgcagaggccaaaccttttgtctgtggggcttgctatgtggagatctgc
accaagtgccatcttgagtatcatcctttcatatcatgtgaggcatacaaagaatacaag
gaagacccagacgcgacactgcgtgaatggcgtaaagggaaggagaatgtgaagaactgc
tcttcctgtgggtacactatcgagaaagctgatggctgcaaccatgttgagtgcagatgt
ggcagccatatttgctgggcatgcttggcgaacttcaggagcagcgaggagtgttatggc
catctcaggtctgtgcaccaatcctttgtggacattgtttag
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integrated database retrieval system
