Lolium rigidum (rigid ryegrass): 124664894
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Entry
124664894 CDS
T09103
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124664894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124664894
03009 Ribosome biogenesis [BR:
lrd03009
]
124664894
04131 Membrane trafficking [BR:
lrd04131
]
124664894
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrd04147
]
124664894
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124664894
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
124664894
Membrane trafficking [BR:
lrd04131
]
SNARE
SNARE associated proteins
Others
124664894
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124664894
Exosome [BR:
lrd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124664894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
nSTAND3
RNA_helicase
AAA_17
CDC48_2
Mg_chelatase
AAA_28
Parvo_NS1
AAA_18
ATPase
ATPase_2
ABC_tran
IstB_IS21
AAA_7
Viral_helicase1
AAA_lid_PRS2_C
NB-ARC
TsaE
AAA_24
Zeta_toxin
NACHT
Vps4_C
DUF815
ResIII
Motif
Other DBs
NCBI-GeneID:
124664894
NCBI-ProteinID:
XP_047058270
LinkDB
All DBs
Position
6:complement(342204741..342207104)
Genome browser
AA seq
787 aa
AA seq
DB search
MSSAPSKKAANRLVVEEATDDDNSMCKLHPATMDRLSIFTGDVVLLKGKRRRSTLCIAIA
DDTCEEHKMKINKVVRSNLRVRVADVVSVHQCHDARHGTRVHVLPVDDTVEGITGNLFES
YLKPYFLDAYRPVRKGDLFLVRGGMRSIEFKVMDIDQGGDLEYCIVAAHTEIFCEGETVK
REDEERLDDVGYDDVGGMRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK
TLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP
NREKTHGEVERRIVSQLLTLMDGMKARTHVIVMGATNRPNSIDPALRRFGRFDREIDIGV
PDEVGRLEILRIHTKNMKLDVDVNLEVVAKDTHGYVGADLAALCTEAALQCIREKMDMID
LEDDTIDAEILNSMAVTNDHLKTALVGTNPSALRETVVEVPNISWNDIGGLDGVKRELQE
TVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW
FGESEANVREIFDKARQSAPCVLFFDELDSIAMQRGGSVGDAGGAADRVLNQLLTEMDGM
NAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDETSRHQIFKACLRKSPVAKDVD
LGALARFTAGFSGADITEICQRACKYAIREDIEKDIEKQRLGKDSMEVDCVQKTEKVAEI
KAPHFEESMKYARRSVSDSDIRKYQAFAQTLQQSRGFGAEFRFPAQPQATQAATNTFAAA
DEDDLYN
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctgcgccgtcgaagaaggccgcgaaccggctggtggtggaggaggcgaccgac
gacgacaactccatgtgcaagctccacccggccaccatggacaggctctcgatattcact
ggcgacgtcgtgctgctcaagggcaagcgccgccgcagcacgctctgcatcgccatcgcc
gacgacacatgtgaggagcacaagatgaagatcaacaaggtggtccgctccaacctgcgc
gtccgcgtcgccgacgtcgtgtccgtgcaccagtgccacgacgccaggcacgggacacgc
gtgcacgtcctgccggtggacgacaccgtcgagggcatcaccggcaacctcttcgaatcg
tacctcaagccctacttcttggacgcctaccggcccgtccgcaagggcgacctcttcctc
gtgcgcggcggcatgcggagcatcgagttcaaggtcatggacatcgatcagggcggggac
cttgagtactgcattgtggctgcccacacggagatcttctgtgagggagagaccgtgaag
agggaggacgaggagcggctcgacgacgtcggctacgatgacgtaggtggcatgcgcaag
cagatggcgcagatcagggagctagtggagctgccgctcaggcacccgcagctcttcaag
tccatcggcgtcaagcctcccaagggtatccttctctacggccctccgggatccggcaag
accctcatcgcccgcgccgtggccaacgagaccggggccttcttcttctgcatcaacggc
cccgagatcatgtccaagatggccggagagagcgagagcaacctcaggaaggccttcgag
gaggctgagaagaacgcgccctccatcattttcatcgacgagattgactccatcgccccc
aacagggagaagacccacggcgaggtcgagaggcgtatcgtctcccagctgctcacattg
atggacggcatgaaggcccgcacgcacgtcatcgttatgggcgccacgaaccggcccaac
agcatcgaccctgccctcaggcgctttggcaggttcgatcgcgagatcgacatcggcgta
cctgacgaggtcggccgcctcgagatcctccgcatccacaccaagaacatgaagctagat
gttgacgtcaacttggaggtggttgccaaggatacgcacggctacgtcggtgccgacttg
gccgcgctctgcaccgaggcggcgctgcaatgcatcagggagaagatggacatgatcgac
ctagaggacgacaccatcgacgctgagatcttgaactctatggccgtcaccaatgaccac
cttaaaacggctctcgtcggcacgaacccttccgcacttcgtgagaccgttgtcgaggtg
cccaacatcagctggaacgacattggcggcctcgacggcgtgaagagggagctgcaagag
accgtccagtacccggtggagcatccagagaagtttgagaagttcggcatgtcgccttcc
aagggtgtccttttctacgggccaccggggtgcggcaagaccttgctggccaaggcgatc
gctaatgaatgccaggccaacttcatcagcatcaaaggacccgagctgctcacgatgtgg
tttggcgagagcgaggccaacgtgcgcgagatatttgacaaggcgcgtcagtctgcaccg
tgtgttctattcttcgacgagctcgattccatcgcgatgcagaggggcggcagcgtgggc
gacgccggcggcgcggcggacagggtcctgaaccagctgctgacagaaatggacggcatg
aacgccaagaagacagtgttcatcattggcgccaccaaccggcctgacatcatcgactcg
gcactgctccggcctggccgcctggaccagctcatctacatccccttgcccgacgagacc
tcaaggcaccagatcttcaaggcctgcctcaggaagtctcccgtggccaaggacgtcgac
ctcggtgcgctcgcgaggttcacggcagggttcagtggcgccgacatcacggagatctgc
caaagggcgtgcaagtacgccatcagggaggatatagagaaagacattgagaaacagagg
ctgggaaaagatagcatggaggtagactgcgtgcagaaaacagagaaggtggctgagatc
aaggcacctcacttcgaggagtcgatgaagtacgcaaggagaagcgtgagtgacagcgac
atcaggaagtaccaggcctttgctcagacgctgcagcagtccagaggattcggcgccgag
ttccgcttcccagcacagccgcaggcgacacaagcggctaccaacactttcgcggcagct
gatgaagatgatctgtacaattga
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