Lolium rigidum (rigid ryegrass): 124665415
Help
Entry
124665415 CDS
T09103
Name
(RefSeq) uncharacterized protein LOC124665415
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124665415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124665415
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124665415
04121 Ubiquitin system [BR:
lrd04121
]
124665415
Enzymes [BR:
lrd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124665415
Transcription factors [BR:
lrd03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
124665415
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124665415
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124665415
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124665415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
124665415
NCBI-ProteinID:
XP_047058784
LinkDB
All DBs
Position
6:complement(351570558..351576629)
Genome browser
AA seq
859 aa
AA seq
DB search
MSTQAKDKCPLCLETMDLTDKHLKPCKCGYEICLWCWHHIMEMDQKDECGGRCPGCRSIY
NKDRILETSTSNQILKELCADKSNLQQEQTKLQKQKPVKSQTRVVEEPIDPNVRVIQRKL
VYIIGMPSELASEKVLRQKSFLGQYGKIENIIIDNIGANQQLPDSGRVYVTFSREEEAVL
CIESVNGYILDGRPLKATFGVTRYCHIWLSNKVCQKPNCSYVHYKALAEDICTKDDVGVF
CARLQHLLGMNMTGPQQRSGSTLPSPGGWNSKTTICTGNSKDKICINDGVVPRDVNKNTG
TLTAAILRDSVRPSCKPPSIVNAAPHRLNNHESVPSQQKKVCSKSPELPQLGPKGRPDEQ
LASSDDKSQASAHLGVSDSKQMASAVNGTAETSWKKPHYANIVSQGSSAPSRRFTVLTRE
STSTDTRSKATGQEGIWVSKKLELLKDVHNDRIPRSQNLKVASQIPEEPLQRLINQLSSV
VVKSHTEAEKKSAHSHIKDTPAQGKDMQLSVNTAASSATVLESISPTVLSSNLSTSDAKT
QTSVGTYKLPNSHRKLASESEPQILHQQKASVSDKDVASVSDCRSILSNQAVCSDGKHQT
SAQGGDHSSCSGKMTMSGDQTSSEQAESIRLTRPVSVLSSTDILAKDSKGRKSLVCPPGF
KVLHKSSDSGNSVSMSSSTCSALCSTSDAPVQESCSVTDQPDIISWVSECLDDGGDTRQS
NSVSIPSTLSPTDTIWRPTQLPGPSFGASNNCILPPYPGGMLQCMSGDQNPMICCCTFPS
VPNQMPEYWNGGASSYMAPGGYNTFYQNTASGMRTGMVGTLLQQPSPPGLYTDWTNGSAD
SGLNSAQVGHPYSVYYSLF
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgagtacccaagctaaagacaaatgtccactttgcttggagacgatggatttgacagat
aaacatctgaaaccttgtaaatgtggatacgagatatgtctctggtgctggcatcatata
atggaaatggaccagaaggatgaatgtggtgggaggtgccctggatgccgttcaatctac
aacaaggataggattttggagacgagcaccagcaaccaaatattaaaggaactttgtgct
gacaaatcaaatttgcaacaagaacaaacgaagcttcaaaagcagaagccagtgaagagt
cagacaagagttgtagaagaaccaatagatccaaatgttcgtgtgattcaaaggaagctt
gtgtatataatcgggatgccttctgagcttgccagtgagaaggtgctaaggcaaaagagt
tttcttggacaatatggaaaaatagaaaacatcattatcgacaacattggagctaaccaa
cagcttcctgactctggccgtgtatatgtcacattttcgagagaagaggaagctgtattg
tgcatagagtcggtcaatggttacatcttggacggcagacctttaaaagcaacctttggt
gttacaagatattgtcatatatggctaagcaataaggtttgccaaaagccaaactgttca
tatgtgcactataaagccctagcagaagatatttgtaccaaagatgatgttggtgtcttt
tgtgcaaggcttcagcatttgttgggaatgaatatgacgggtccccaacagcgttcagga
agtactttaccttctccaggtggctggaattcaaaaactaccatttgtactgggaactcc
aaagataaaatttgcatcaatgacggagtagtacccagggacgtcaacaagaatactggt
acactgacagcagcaattctacgggattcagttcgtccttcttgcaagccgccatccatt
gtaaatgcagctcctcatcggctgaataaccatgagagtgttcctagtcagcaaaagaag
gtttgctctaaatctccagaattaccacaacttggaccaaagggccgacccgatgagcag
ttggcttccagtgatgataaatcccaagcatctgcacatttaggagtttcagattcgaag
caaatggcctcagcagtaaatggaacagctgaaacttcatggaaaaaaccacattatgct
aatatagtttcacaaggatctagcgcaccgagtcgccgctttactgtactcactagggag
tcaacatctactgatacaagatctaaagccacaggacaagaaggtatttgggtttctaag
aaacttgaattgctaaaagatgtacacaatgatagaattcctagatcccagaatttaaag
gtagcttcccagataccagaggaacctctccagaggttaattaaccagctgtcctcagtc
gttgttaagtctcatactgaagcagagaaaaagagtgcacactcacatatcaaggatact
ccagctcaaggaaaagacatgcagctttctgtgaacactgcagcatccagtgcaactgta
ttggagagtatcagtcctactgtgctcagtagtaatctttcaacttctgatgccaagaca
cagacatcagttgggacatataagcttccaaattcacacagaaagttggcatctgagagt
gaacctcagatcttacatcaacaaaaggcgtctgtttcagataaagatgtagcaagtgta
agtgactgccgaagcattctcagtaatcaagctgtgtgtagtgatggcaaacatcaaact
tcagcacaaggaggggatcacagctcgtgctctgggaaaatgactatgtcaggagatcaa
acttcatctgaacaggcagagagcattcggttaacaagaccagtcagtgtcctttcttcc
actgatatattggccaaggatagcaagggaagaaaaagcttagtttgtcctcctggattt
aaggttcttcacaagtcatctgattcgggcaattctgtatcaatgagctcctcaacttgc
tctgcgctgtgctctacatctgatgccccggtacaagagtcatgctcagttacagaccaa
ccagacataattagctgggtctcggagtgcctggatgatggtggtgataccagacaaagc
aatagtgtgagcataccttccacactcagtcccactgataccatctggagacccacacag
cttcctggccccagttttggtgcatcaaataactgtatattaccaccctaccctggtggc
atgttgcagtgcatgagtggggatcaaaaccccatgatatgctgctgcacttttccgtcc
gtaccaaatcagatgcctgaatattggaatggaggtgccagtagctacatggcccctggt
gggtataatacgttctaccaaaacacggcatcaggcatgagaactggtatggtaggcaca
ttgctccaacagccgtcgcctccaggcctctacactgactggactaatggaagcgcagat
tcaggcttgaatagtgcacaggttggccatccatactcagtgtactactccctcttctga
DBGET
integrated database retrieval system
