Lolium rigidum (rigid ryegrass): 124665541
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Entry
124665541 CDS
T09103
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03022
Basal transcription factors
lrd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124665541
09124 Replication and repair
03420 Nucleotide excision repair
124665541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124665541
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124665541
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124665541
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124665541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
124665541
NCBI-ProteinID:
XP_047058897
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All DBs
Position
6:344495413..344504110
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AA seq
601 aa
AA seq
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MGTLTIGAKYRTTLRDPGTSGVLNMSEDKFTFTPHGTCSLMVLNVDFRSIKGHKFNRVDG
SKPTQPLLNLLHNSDKGGGYIFEFDNVGNRDLCRDFVARLFGKHQGTVPPTPNGVPPKST
ASTGPEQVSSAEMERRMKLLREDSELQNLHKKFVVCNILQESEFWTMRKNLLDSEVNKAP
KQKPGFKSVMVADVRPSSDGKTNKVTFHPTTEMIDEIFAEKPAVHRAFLDYVPKKLSEQD
FWTKYCRAEYLLRTESTLRAKAEAAGDEELAMFLKNDDILAKEAKLKIKQVDPTFDMEAD
AGDDYIHLPDHEILRDGTEETTDTDIEVARRSLSQDLNRHAAVVLEQRSTDIKSADMEPV
TGALARSRKERPSSSVADDASHERLVKMARMIEIEDLQVPRTIPYAPLCIKDPREYFDSQ
QANALRTLNGNNDVRKAHSCSLSTHEAFGHLMDQIPSVKLNCPIVQSDVALKVLKELNEG
ISRSRMLNLKKPQDSLLGRLPRRTRDELMDHWMAIEELLHHFWSSYPITTAALRNKVQRV
LGAMTQIYQKLQDIKESAQPDVRHDISRLVKPMTQALDAAFDHDLDQQQKSSKPGNSPSG
F
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggggaccctgacgatcggtgccaagtacaggaccacgctcagggaccccggcaccagc
ggcgtcctcaacatgagtgaagataagttcacatttacccctcatggtacatgctcatta
atggtgctcaatgtcgatttccgaagcatcaaaggtcacaagttcaacagagtagatggt
agcaaaccaacacaacctttactgaatcttttacataattctgacaaggggggaggctat
atttttgagtttgacaatgttggtaaccgtgatttgtgccgcgactttgtagctaggctt
tttggcaaacatcaaggtactgtgcctcctacaccaaatggtgtacctccaaaatcaact
gcgtcaactggtccagaacaagtcagttctgccgaaatggagcggcggatgaaattactg
cgagaagacagtgaactgcagaacttacataagaagtttgttgtttgcaatattctgcaa
gagtctgaattttggacaatgagaaagaatttacttgactctgaagtaaacaaagcacca
aaacaaaagccaggtttcaaaagtgtgatggtagctgatgttaggccatcatctgatgga
aagacaaacaaggttactttccatccgactaccgagatgatcgatgagatttttgcggaa
aagccagccgtgcatcgggcatttttagattatgtcccaaagaagttatcagaacaggat
ttttggacaaaatattgtagagctgagtatctacttaggacagaaagtactttaagggca
aaagctgaggctgctggagatgaggaattagccatgttcttaaaaaatgatgatatactt
gccaaggaagcaaagctcaagataaaacaagttgatccaacatttgacatggaggcagat
gcaggagatgactacatccatctcccggatcatgagattctccgtgatggcaccgaagag
acaactgatactgatattgaagtggctaggagatcactttctcaggatctgaatcggcat
gctgctgtcgttcttgagcagagatcaacagatatcaaatcagctgatatggagcctgtt
actggagcacttgcaaggtccaggaaggaaagaccttctagttctgttgctgatgatgct
agtcatgagagattggttaagatggcccgcatgattgagatagaggacctgcaagttcca
agaactataccgtatgcaccactttgtataaaggatcctcgagaatatttcgattctcag
caagcaaatgctctgagaactttaaatggcaataatgatgtaagaaaggctcatagctgc
agcctgagcacccatgaagcattcggtcatttgatggatcaaataccgtctgtgaaattg
aactgtccgattgttcaatcagatgtggctcttaaggttcttaaagaattgaatgaagga
atttcacgatcacgaatgcttaatcttaagaaacctcaagacagtctccttggtcgtctg
ccacgccgaacacgagatgaacttatggaccattggatggctatcgaggagttgctgcac
catttttggtcatcgtacccaataacaactgcagcccttagaaataaggttcaaagggtt
ctgggtgcaatgacacagatatatcaaaagttacaggatataaaggaatcggcacagcct
gatgtaagacacgatatatctcgactcgtaaagcccatgacccaggctctggatgctgcc
ttcgaccatgatctagaccagcagcagaaatcttcaaagcctgggaacagccccagcggg
ttttga
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