Lolium rigidum (rigid ryegrass): 124665720
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Entry
124665720 CDS
T09103
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC124665720
KO
K19026
spatacsin
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124665720
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
124665720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
124665720
NCBI-ProteinID:
XP_047059063
LinkDB
All DBs
Position
6:334901410..334920428
Genome browser
AA seq
3107 aa
AA seq
DB search
MPISGEMDDGPTVLQLYKWEKPQPYLEELSKFQEASISPTRRLFGLLSDHGDLVLSTVNA
KPSHVESPTALSDSGLPVFKCFSSIPGVKSLAWGHCCDASSKPEVPAFSEFLVLSGDDSL
TVHAFCHSYKSTVTVSDMEELHGDWKEWFPTEGSLSEDGESGRKNCFRSFLTTISGSVCN
GKYQARFPLKSSLPHSAEVVSFSIYDITMSFLKFWSSNNSMEARMETDLLSHVPVTEASC
SCQWECLKVLPGPSGHLIGLVLTPKESVSCEVHERNTNDILVAILELNHWGIHWNFVVDL
QNVYNDAGPNPRWVDFQLSDIFLASLNAVGIVAIWNVKTGHPITSFSVLQRCRIDLEMPL
GSTIPAVTNLDGESTCGGNVVGRMFKRLVLAPYSLLVAAIDVVGVAYVFYADDILNFKGN
AHENFGQPSMNQYGDNCAAWETAGRGIGTTFCSHQSSQQGSDTLVSDFSERDNAGVVRAR
KRRKYWKCNESQLDSWPSGFSTTPQIKDVVTYPYTMAVCSPMRRVVLPPHRLQDDILSLS
PFGLTRIFKGCNADGNKHITIVHTKLLMASRLLDERDINDGFLDRRLLFQKDFSVAGESA
VCSFQGYVYLISQDGLSVVLPSVSTSSFSSCIDDIQFWQPGFSGGSACNALNLTSVNRPE
TRWKTWQIEVLDRALLYEGPSLADRLCWENGWDLKISRLRWVQLSLHYTNISDLEQSLYM
LAEVNLAEEGVLQLLLASVYRLLCTRGSDYEAEVSSKLLVLAVRFATRTIKSYGLNKQKE
DNSVKLHEMAFLLGVIRSIQGRVIAKNQNSIRMQGDDRNSLKIDKEVLQNDSSLPIVVVD
GVSSGLPGGLDADDRQGSASTVFEFVPGSSRQLALTPVETSLTTQFHENNTDQGTTHVVR
PVTQGNVKDMMNRWETNKFDLKAVVREALQSGRLPLAVLQLQLLRQREPCSSYDSEDAFS
EVREIGRSIVYDFLMKGESGLAVATLERLGDDIEADLRQLMQGTVRRSLRLQIADEMKQR
GYMRSNEWTMLETLALIERFYPSSSFWDTYLGRENVIHDAANIVTLPGEDKPVLTLNIYN
HPAIECGDVDGAVLGSWVNVSDYTDLKEFSQSDLSKGYWACAAVWSDAWDQRTVDRIILD
QPSHMSAQSNLPWESQFEYFVAHSDVGGVCKLLDIIPDSVLLEGILRVNVDNSRVGYSTV
SDVTVPDYKMYICDSEELEPVCLEVPHVKVFRSLSNNESTSWMRMLMQKELAKKHIFMKE
YWQSTTEIIPVLARAGILINTEIGSKKESSMPFYASEMPDDDERHRACERALHKLVMRFC
VQYDSPYLLDIYLDNCNFVLGEDSVPLLKEAAGDCKWAQWLLFSRVKGYEYEASFSNARW
NLSQKMINHGNLTAIEIDEILYTVDDMAERIAEMSALATLMYASLPIQKSICTGSVNRNR
GLSSQCTLENLGPCLQQFPTLWKTLRSTCFGEDGYGCLNYSPTNVPGKSSISEYLCWRYN
IFSCAGGDTSLLQMLPCWFPKSIRRLIQLYEQGPFGMQMLSSAPSSVELFTHSVTDYIYN
TTGYSEINALSLEASIQRSVEEELYSSLEEKDLRVEHHLHRGRALAAFRHLLGKRASQLK
SANAGQVISTQSDVQADVQLILASLSQTERSVLLSVAPLAITNFEDSTLVASCTFLLELC
GMCANMLRLDIAALQRISSYYSLVQQNKKYELSSQSSPGLHVLSHGADIAPALARALADD
YVQSDHLHVLEQKQNSGVPKREQPSQPLIAILEHLERASLPLLDEGRTCGFWLFSGIGDA
SVYRSQQNEASQHWNLVTEFCQTHHLPLSTKYLALLANDNDWVGFLTEAQRAGFPIEVVI
GVASKEIRDSRLRTHILTVLKHTQSNRRKSSSNILSGSKESSFLSVDGDDPMEIFCILAV
CEKQKNPGEALLNKAKQMQWCLLALIASCFPDVTTLSCLSCWLEITAARELSLIKVDGIS
SKIAKNVGSAVEATNKLPSMSRNVEFRYNRKNPKRRRFLEASPDSFTSGFLLDITCGPNA
TAISNPSDINAQQEKRKPTSKETKVPVDMDERLTSLSSIIAVLCEQQLFLPLLRAFEMFL
PSCSLLPFIRSLQAFCQMRLSEASAHLTSFSVRIKDEASQSNSSKESSSITGLVVHTAVK
AADAVLSTCPSIYEKRCLLQLLAAVDFADGGSSSAYFSRSYWKINLAEPSLCKDGDIYKW
SDSMDDASLMAALEKDGRWEEARTWARQLESGDTARESTFDHVTESQAEAMVAEWKEFLW
DIPQERAALWGHCQTLFMRYSLPPLQAGLFFLKHAEELGKEIPAQELHEILLLSLQWLSG
TITKSSPVYPLHLLREIETRVWLLAVESEIHLKADGECTPSAVTQNLAIGNTTSIIEQTA
DVITKIDNSMSLPSMRAAERNGMMDNNLSGHQHLQLFEYNSEATTTNNTRAKRRGKTNLP
LRRGVNGNSGSSTSDSGDNSKFFHHSKIDEQARNLLSEEEFAKMEASLSGWEQHVRPADM
EKAVLSLLEFGQITAAKQLQQKLSPSYVPEELVLVDVALRVADNGSNGDISLLCFDTEAL
SILQSLEIASRSNMIDPSQAMEKLAMKCGEGRGRALIRRIIAVVQTAKILGLSFSEAFEK
QPIELLQLLSLKAQDSFNEAKFLVETHIMPASSIARILADSFLKGLLAAHRGGYLDSQKE
EGPAPLLWRSSDFLKWAKLCPSEPEIGHALMRLVMTGHEVPHACEVELLILSHHFYMSSS
CLDGVDVLVTFAANRVDSYVLEGDFTCLARLITGVSNFHSLSFILSILIENGQLDLLLQK
YSSTDTATVTPASVRGFRIAVITSLKHFNPNDDEALSLVYTHFDMKHEAASLLESRAEQY
MKSWLRRQDKERRNDELLKAMHDLVQTAEVLSTIDAGQRTHRACARASLLSLQIRIPDLV
WIGLTETNARRIFVDQSRFQEALIVAEAYSINQPMEWAPVFWNQMPRPDLIELFVAEFVL
VLPLQPPMLVELARFYRAGVAARGEQPHFSAWLSPVGLPAEWVNLGRSFRSLLRRTRDMR
LRLQLATLATGFSDVVDVCNGVLDKVPEKAGPLILRKGHGGAYLPLM
NT seq
9324 nt
NT seq
+upstream
nt +downstream
nt
atgcccatatctggtgagatggatgatgggcctactgtactgcagttatataagtgggaa
aagccacagccctatctcgaggagctatcgaaattccaggaagcttccatatctcctaca
aggcgcctctttggactgctctcggaccatggcgatcttgtcttgtcaacggtcaatgcc
aaaccatcacatgttgaatcacctacggctctctcggatagtggcctgccagtctttaag
tgcttttcttctattcctggagtgaagtctttagcgtggggacactgctgtgatgcttct
agtaaacctgaggttccggcttttagtgaatttcttgttttatctggtgatgattcactc
acagttcatgcgttttgtcattcgtacaaaagcacagtaacagttagtgatatggaagag
ttgcatggggactggaaagaatggtttcctactgagggctctttgtcggaggatggcgag
tcaggtcgaaagaactgctttcgttcttttctgactacaatcagtgggtctgtttgtaat
ggaaaataccaagccagatttcccctgaaatcttcattacctcattcagcagaggtggta
tcatttagcatatatgacattactatgtcctttttgaagttctggtctagcaataatagt
atggaagctaggatggagaccgatcttcttagtcatgtacctgtaactgaagcatcatgc
agctgtcagtgggaatgtttaaaagttctgccaggtccctctggtcatttgattggttta
gtcttaactcctaaggaatcagtaagttgtgaggtccatgaacgcaacacaaacgatatt
ttggtggctatacttgagctaaaccattggggtatacactggaactttgtggtggacctt
cagaatgtatataatgatgcagggcccaatccacggtgggtcgatttccaactgtcagat
atatttcttgcctcccttaacgcagtgggtattgttgccatttggaatgtgaaaactggt
caccctatcacctcttttagtgttcttcaacggtgcagaatagatctggagatgcctttg
gggagcaccatacccgctgtaacaaatttagatggagaaagcacctgtggtgggaatgtc
gttggcagaatgtttaagaggttagtcttggcaccatactctctacttgttgctgccata
gatgtggttggggtagcctatgtgttctatgctgatgacatcttaaatttcaaaggcaat
gcacatgaaaactttggccagccttctatgaatcagtatggtgacaattgtgctgcctgg
gaaactgctggacgtgggattgggacaacattttgcagtcaccagtccagtcaacaaggg
tcagacacattggtttctgatttttcagaaagagacaatgctggtgttgtccgagctagg
aaaagaagaaaatactggaaatgtaatgaaagtcaactggatagctggccaagtggtttc
agtactacgccacaaataaaagatgtggtaacttatccttacacaatggcagtttgtagt
cccatgcgaagagtagtccttcctccacacagattgcaggatgatatattaagcctctcg
ccatttggactaacgaggatctttaaaggttgcaatgctgatggaaacaaacacataaca
attgttcacacgaagttgcttatggcttcacgtttacttgacgagagagatattaatgat
ggttttctggacagaaggctcttgtttcagaaggatttctctgttgctggagaatctgct
gtttgctcgtttcaaggatatgtatatttgatttcgcaagatggcctttctgttgtcctt
ccatcagtgtctacttcatccttttcatcttgtatcgatgacatccaattttggcaacct
gggttttctggtggtagtgcatgcaatgctctgaatttgacatcggtaaatagacctgaa
acaaggtggaagacctggcaaatagaggttttggatagagcattgctgtatgaaggacct
tcattagcagacaggctctgctgggagaatggatgggacctgaaaatatctaggctacgt
tgggtgcaattgtcattgcattacacaaatatcagtgatctggagcaatcattatatatg
ctcgcggaggtcaatcttgcagaagaaggtgttctgcaactgctattggcatctgtatat
cggctattatgtacaagaggaagtgattatgaggctgaagtgtcatccaagttattggtt
ttagctgtccgctttgcgacgagaacgatcaagagttatggtctaaataagcaaaaagaa
gacaattcagtaaagcttcatgaaatggctttccttttgggggtaattagaagtattcag
ggccgagtcattgcaaagaaccagaattctatccggatgcagggagatgatagaaactcg
ctgaaaatagacaaagaagtgctgcaaaatgattcttctctcccaattgttgtagtggat
ggtgtttcatcaggactaccaggtggtttagatgctgatgacagacaaggatcagcatct
actgtgtttgagtttgttcctggtagcagtaggcagttagcgttaacaccagttgaaacc
tctcttactactcagtttcacgaaaataacactgatcaaggaaccacacacgttgtaaga
ccagttactcaaggaaatgtcaaggatatgatgaaccgttgggaaacgaataaatttgac
ttgaaagcagtagtcagggaagcactacagtctggtcgactacctttggcagttcttcag
ctgcaactattgcgccagagggaaccatgttccagttatgattctgaagatgctttctcc
gaagtccgtgagataggaagatccattgtttatgattttttaatgaagggtgaaagtgga
ctggctgtagcaacactagaaagactaggagatgatatagaggcggaccttagacagctt
atgcaaggtactgtcagaaggtcacttaggctgcaaattgccgatgagatgaaacagcgt
gggtacatgaggtcaaatgagtggacaatgttggagaccttagcactgattgagcggttt
tacccaagcagcagcttctgggacacgtatcttggcagggagaatgtcattcatgatgct
gcaaatattgttacacttccaggggaagataaaccagtgctaactctcaacatctataac
catcctgctattgaatgtggcgatgttgatggagctgtgcttggttcttgggtgaatgtt
agcgattacactgatttaaaggagttctctcaaagcgacctttccaagggttattgggcc
tgtgctgctgtgtggtctgatgcttgggatcaaagaactgtagaccgtataatactggac
cagccttcgcatatgtctgctcaatccaatctcccatgggaatctcagtttgaatatttt
gttgctcatagtgatgtggggggagtctgcaaactcctggacatcattcctgacagtgta
ctactggaagggattcttagagttaatgtggacaattcacgagttggctacagcactgtg
tctgatgtgacggtccctgattataaaatgtatatatgtgactcagaggagctagaacct
gtttgcttggaggtaccacatgtcaaagtattcagatccttgtctaataatgaatcaaca
tcatggatgagaatgctaatgcagaaagaactggcaaagaaacacatctttatgaaagag
tactggcaaagtactactgagattatacctgtacttgctcgtgctggcatacttattaat
acagagattggttccaagaaagaatcttctatgccattttatgcttcggagatgccagat
gatgatgaacgtcaccgggcttgtgaaagggcattgcataaactagtcatgcgtttctgt
gtgcaatatgactctccgtacctacttgatatctatctggacaactgcaattttgttctc
ggagaagactctgtccctctgctcaaagaagccgcaggtgattgcaagtgggcacaatgg
ttactcttctccagagtcaaaggttatgagtatgaagcatccttttctaatgcccgttgg
aatctgtcacagaaaatgattaatcatggcaatctaactgcaattgagatagatgagata
ttgtatactgttgatgatatggctgaacggatcgcggaaatgtctgcactagctacctta
atgtatgcctcactaccaattcagaagtccatatgtactggaagtgtgaacagaaatcgt
gggctgtcttctcagtgcacattagagaacctaggtccttgtctccagcaatttccgaca
ctatggaagacacttcgttctacttgttttggggaagatgggtatggctgtctaaattat
tctccaactaatgttcctggaaaatcctcaatttcagagtacctgtgctggcgctataac
attttttcctgtgctggaggagacacttcattgctgcaaatgcttccgtgttggttcccg
aagtctattagaaggttaattcaactatatgaacagggcccttttggaatgcaaatgcta
tcgagtgcaccatcatcggtagagttatttactcacagcgtcacagattacatatacaat
accactggatatagtgaaatcaatgcgttgtccttagaagcatccattcaaagaagtgtt
gaagaagaactatattcttcccttgaggagaaagacttgagggtggaacatcatttacac
cgtggtcgagcactagccgctttcaggcatcttcttggtaaaagagcttcacagttaaaa
tcagcaaatgcaggccaagtgatctccacacagtctgatgttcaagcagatgtacaactg
atcctagcttctttaagtcaaactgaacgatcagttcttctatcggtggctccactagca
attacaaactttgaggactcaacactagttgcttcctgcacattcttgttggaactctgt
ggcatgtgtgccaacatgcttcgtctagatattgctgctcttcagcggatctcttcctac
tatagcttggttcagcaaaataaaaaatatgagctgtcttcacaaagtagccctgggtta
catgttctttcccatggagctgatattgcccctgctcttgctcgagcattagctgatgat
tatgtccagtctgatcatcttcatgtcttggagcagaagcagaactctggggttcccaaa
agggaacagccatcacagcctcttattgctatattggagcacctggaacgagcaagtttg
ccactattagatgaaggtagaacctgtggattttggctgttcagtggcattggtgatgca
tctgtttaccggtcacagcaaaatgaagccagccaacattggaatttggtcacagaattc
tgtcagacgcaccatctcccattaagtacaaaatatctggctttactggctaatgataat
gattgggttggttttctaacagaagcccagagggctggttttccaatcgaagttgttatc
ggagtggcttccaaagagataagagactcaagattgaggactcatatactaacagttctg
aaacacacacagtcaaatagaaggaaatcttctagcaatatactctcaggaagtaaggag
tcatctttcttgtctgttgatggtgacgaccccatggaaattttctgtatacttgctgtt
tgtgaaaagcaaaagaaccctggagaggcacttctgaataaagcgaagcaaatgcagtgg
tgtttactggcattgattgcttcatgttttccagatgtgactactctatcatgcttaagt
tgttggcttgagattacagctgcaagggagttgtccttgatcaaggtggacggtatttca
tctaaaatagctaagaatgttggatccgctgttgaggccacgaataaattgccaagcatg
agtaggaatgttgaatttcgttacaacagaaagaatccaaaacgaagacggttcttggag
gcctctccagatagcttcacatcaggtttcttgctggacatcacatgtgggccgaatgct
actgcaatttccaatccttccgatatcaacgcccagcaagaaaaaagaaagcccacttcc
aaagagactaaagttccagttgatatggatgagaggcttacatctttgtcaagtataata
gcggtgctctgcgaacaacagctattcctaccattacttagagcatttgaaatgtttctg
ccctcctgctcccttctccccttcattcgttcccttcaggcattttgtcaaatgcgtctg
tctgaagcttctgcacatttgacatcattttcggtgagaataaaagatgaagcctctcag
tcgaactcatccaaagaatcatcatctataacaggattggtagttcatacggctgtaaaa
gctgcagatgcagtactctcaacctgcccatcaatttatgagaagaggtgtttgctacag
ctccttgcagcggttgattttgcagatggtggctcttcatcagcttactttagccgaagt
tattggaaaattaatctagctgaaccttccttatgcaaagatggtgatatctacaagtgg
agcgattccatggatgatgcttctctcatggcagcattagaaaaggatggcagatgggag
gaagctcgcacttgggcaagacaacttgaatcaggtgacacagctcgggaatctacattt
gatcatgtgacagaatcacaggcagaagctatggttgccgaatggaaagagtttctctgg
gatattccacaagaacgtgcagctttgtggggccactgtcagacacttttcatgagatat
tctttgcctcctttacaggctgggttattttttcttaagcatgctgaagaattaggaaaa
gagataccagcacaagagcttcatgaaatactcctgttatctttacaatggcttagtgga
actattaccaaatcttctccggtatatcctctccatcttctgagggaaattgagactagg
gtttggctcctggctgttgagtcagagattcacttgaaggctgatggtgaatgcacacct
tctgctgttactcaaaatctagctattggaaatactaccagtatcatagaacagactgct
gatgttatcacaaaaatagacaacagtatgagtttgcctagcatgagagctgcagaaaga
aatggcatgatggataataacctatcaggccatcaacatttgcaactctttgaatacaac
agtgaagcaacaacaacaaataacacaagagcaaagcgaagaggaaaaacaaatctacca
cttagacgaggtgtcaatggcaattctggaagtagcacaagtgattctggtgacaattct
aaattttttcaccattctaagattgacgaacaagcaagaaatttactatctgaagaggaa
ttcgcaaagatggaagcgtctttgtctggttgggagcaacatgtcaggcctgcagatatg
gagaaggctgttctctccttattagaatttggacaaataactgctgctaagcagctccaa
caaaagctatctccatcatatgtccctgaagaacttgttctcgttgatgttgcactaaga
gttgcagataatggcagtaatggagatatcagtttattatgctttgacacggaagccctt
tcaatacttcaatcactcgaaatagcaagtagaagtaatatgattgatccatctcaggct
atggagaaattagccatgaaatgtggtgaaggccgtgggcgagctcttattaggagaata
atagcagtcgtgcagactgcaaaaatactgggactatcattttctgaagcatttgagaaa
cagccaattgaacttctgcagttgctttccctgaaagctcaggactcttttaatgaagct
aaatttcttgtggagacacacatcatgcctgcatctagcattgcaagaattcttgctgat
tcctttttaaaggggcttttggctgcacatcgtggaggctatctggactcccagaaggaa
gaaggcccagcaccactattatggagatcaagtgacttcttgaagtgggcaaaactatgc
ccatctgaaccagaaattggccatgctttaatgcgtttggtgatgactgggcatgaagta
ccacatgcttgtgaggttgaactccttatactgtcacaccacttctacatgtcgtcgtct
tgtcttgacggtgtggatgttctggtcacattcgcggctaatagagtggattcatacgtt
ttagagggcgattttacttgcttagctcgtttgatcacgggagtgagcaattttcactcc
ttgagcttcattctttccatccttatagaaaatgggcaattggacttgctgcttcaaaag
tattcttccactgacacagccacagtgacacctgcatcagttcgagggttcaggatagct
gttattacatcactcaaacattttaaccctaatgacgacgaggctctctctttggtatac
acacacttcgatatgaaacatgaggctgcttctctcctggagtcacgagcagagcagtac
atgaaaagctggttacgtcggcaagataaggaacggcggaatgacgagctccttaaggct
atgcatgaccttgtacaaacggctgaggttctttcaacaattgacgctggccaacggaca
catcgtgcttgtgctcgtgcttccctactatctcttcagattcgtatacccgatcttgta
tggattggtcttacagaaaccaatgcacgtcggattttcgtggatcaatctaggttccag
gaggcccttatcgttgctgaagcatacagcataaaccagccaatggaatgggcccctgtc
ttttggaaccagatgccgagacctgacctgatcgagttatttgtggctgaatttgtactt
gttttgccccttcagccaccaatgctcgtcgagcttgcaagattttaccgtgcaggggtt
gcagccaggggtgagcagccgcacttctccgcctggctttcgcctgtaggcttgcctgct
gagtgggtgaatctcggaagatcattcaggagcctgctgcgtagaacgagggatatgagg
ctgaggctgcagttggcaacccttgcgacggggttcagcgatgtcgttgacgtctgcaat
ggagttctggacaaggtccctgagaaagctggcccactaattctgaggaagggccacggg
ggtgcatacctccctctcatgtaa
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integrated database retrieval system
