Lolium rigidum (rigid ryegrass): 124665854
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Entry
124665854 CDS
T09103
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124665854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124665854
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
124665854
DNA repair and recombination proteins [BR:
lrd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
124665854
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
LETM1_RBD
Rho_N
Motif
Other DBs
NCBI-GeneID:
124665854
NCBI-ProteinID:
XP_047059177
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Position
6:complement(87310974..87316093)
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AA seq
520 aa
AA seq
DB search
MQQLLRGASLLRLYECSRGLPSANYSCRKLVLTKLNVMSEGIRATYSRRAASKNIEIKKD
DQTITEKVSLVCPFVLSLSEDVTESTLEIERIRGDPSMLQSMTVKELRELTRRMGVSGKG
NKKDLVSALMDSLGQEVTDKDGASTVEKVGPSEVPSKRKGAASVVVEQNLETSEVISATP
SKRSRTKQKSTKGITPKENSVTTVKLNKTSIQKETVVVHGTVDDAEPWTLLVHKKPRPEW
IPYNPKVMRPPPLGKDTRAVKILSWNVNGLRALMKSRGFSVHELAQREDFDILCLQETKM
QEKDVEVIKETLLEGYTNSFWTCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRVV
TVEFDDFYLLTAYVPNSGDGLKRLTYRVTEWDPCLGNYMKELEKSKPVILTGDLNCAHQE
IDIHDPAGNSRSAGFTKEERKSFETNFLSKGFVDTFRKQHPDVVGYSYWGYRHNCRKTNR
GWRLDYFLVSESIAERVHDSYILPDVSASDHSPLGLILKL
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagctcctgcgcggcgcctctctcctccgtctctacgagtgtagccgtgggctt
ccaagtgcaaactacagttgcagaaagttagtgcttacaaaactaaacgtgatgagtgag
gggattcgtgctacgtattcacgccgagcagcctctaagaacattgagatcaagaaagat
gaccagacaatcacagagaaggttagtcttgtatgcccctttgtgctgtcattgtccgaa
gatgtcactgaaagcacgttggagatagagcgaatcagaggtgatcctagtatgctccaa
tccatgacagtgaaagagctcagggaactcacaaggaggatgggcgtttcggggaaaggt
aacaagaaagacttggtatcagctctgatggattctctaggccaggaagtaactgataaa
gatggagcatcaacagttgagaaagttggcccatcagaagtaccttcaaaaagaaaaggt
gccgcttcagtagtagttgaacaaaatttagaaacttctgaagttatttctgcaactcct
agcaagagaagtagaacaaagcagaaatcaaccaagggcatcactccgaaggagaattct
gtgactactgtcaagctaaataagacatcaatccagaaggaaacagttgttgttcacggt
actgtggatgatgcagagccttggactctacttgtgcacaagaagccacgacctgagtgg
attccctacaatcctaaggtcatgaggcctccaccccttggcaaggatacaagggccgta
aagattctatcatggaatgtcaatggactgagagctttgatgaaatctaggggcttctct
gttcatgagttagcacagagggaggatttcgatatactatgcctgcaagagacgaaaatg
caggagaaagatgttgaagtcattaaagaaactctacttgaaggctataccaatagtttc
tggacatgcagtgtatcgaaacttggctattcggggactgccatcatttcacgggtgaaa
ccactttctatcaagtatgggcttggtgtaccagaccatgatacagaagggagggttgtg
acagtggaatttgatgatttttacttgctaaccgcttatgtgccgaattccggtgatggc
ctaaaaagactgacttacagggtcacagagtgggatccatgccttggtaactacatgaaa
gaattggaaaagtcgaaacctgtcatactaactggtgatcttaactgtgctcatcaggag
attgatatacatgatcctgctggaaatagtagaagtgctggcttcacaaaagaagaaagg
aaatcattcgagactaacttcttgtccaaagggttcgttgatacgtttcggaaacagcat
cccgatgttgttggatatagctactggggatataggcacaactgccgcaagactaataga
ggttggcgcctggattactttctcgtgtcagagtccatcgcagaacgagtccatgattcg
tacatcctcccggacgtttcggccagcgaccacagccctctcggcctcatactgaagctc
tag
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