Lolium rigidum (rigid ryegrass): 124666160
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Entry
124666160 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124666160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124666160
03009 Ribosome biogenesis [BR:
lrd03009
]
124666160
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124666160
Spliceosome [BR:
lrd03041
]
Complex A
U1 snRNP components
U1 related factors
124666160
Complex B
124666160
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Helicases
124666160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
124666160
NCBI-ProteinID:
XP_047059466
LinkDB
All DBs
Position
6:319657234..319664425
Genome browser
AA seq
1249 aa
AA seq
DB search
MPNQQGPQQPLAPQSQYPNMHPQQPAPYQHGPYMQPHQQQQYSYQVGQQPQMQQNPYSQG
QQQPIPQAANQGQQQPTMPPGGYNQGQQQQPAMPPGAYNQGQRPPMPQGAYSHGLRPPMP
QSAYNQGQQPQMPQHGSYNQGQQLQGVRMPQSQPQHTQQSPGFHQPVQAPQVLQAPQSQG
LQMSPPQGQLQHGFPFTPQQGKQPQHGHVGAHISQLSHGQHSSEVKGDAGGLEGKQAGFS
LPLSQQRGQAPLPNQQLPYSHQRPEAHSQLNIHGVGGPAYPAKHHLGGLSPRETNNTSFS
SSPAHIHQGGLDTNYRQQLASSHVAPNHIAPSPGRPPVGFKRGNSEDQFEKHEPHTSGRF
DGISAPHQQPKLAALPPSQNHLQDTRNGPPYPQPDNFGGYNMAPPHLVQNPLNNGPFPVG
ALTRPPPGTFPPPDFPSVASVDAYRQHHEVTAVGENVPPPFMTFEATGFPPEILREVHAA
GFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAFVHLSRCQNNPMLGPTVLVL
APTRELASQIQDEAIKFGRSSRVSCTCLYGGAPKGPQLRELERGADIVVATPGRLNDILE
MRKISLHQISLLVLDEADRMLDMGFEPQIRKIVDEIPRSRQTLMYTATWPKEVTKIAGDL
LRDPVQINIGSIDELVANKSITQYVEMVPPMDKQHRLEQILRAEERGSKIIIFCSTKKMC
DQLARGIGRSFGAASIHGDKSQGERDQILNQFRTGRVPVLVATDVAARGLDIKDIRVVIN
YDFPTGIEDYVHRIGRTGRAGATGVAYTFFSEQDWKYAADLVKVLEGTSQEVPPALQQMA
ARGAPGGPRNQAGGMSRWDGPGGGNRFESAAGGPGGYGGVREVPGVFGGRDGPGGFVDRG
GPGGFVDRDGPGRFAGREGPDGFGGRDGPGGFGGRMGPGGFGGREGPGGFGGREGPGGFG
GRDGPGGFGGRDGPGPSGFSGRGGRGPDGFSRRGGGSPGRFGGSGGRGDSPGFGGRGRGD
SSGFGGRGRGDFSGGRGGRGRGFGGRGRSDRFISDGRGRYDDRRGFGDKGRGRSYSRSPD
RGRSRGYDRRSDSRSLSSRSRSRSRSWSRSRSRSRSWSRSRSRSRSRSRSRDQGAGPERR
PRARSGFDVPPPATEAGPVLAAPVPVPGPVADVAALKPGQSLADASDMSPMSPGGLVQVQ
EGGPFMGGGDAKVSSAQADQPSQGKDLVVPPSFSAAENFPGPAVQQDAP
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaccagcaggggccgcagcagccactagcgcctcagagtcagtatccaaacatg
cacccgcagcagccggcgccgtaccagcacggtccttacatgcagccccatcagcagcag
cagtactcgtaccaggtaggccagcagccgcaaatgcagcaaaacccctacagtcaaggt
cagcagcagccgattccgcaagctgctaatcaagggcagcagcagccaacgatgccgccg
ggtgggtacaaccaagggcagcagcagcagccggcgatgccaccgggtgcctacaaccaa
ggtcagcgtccaccgatgcctcagggtgcctacagccatggtctgcggccgcccatgccg
cagtctgcctacaatcagggccagcagccgcagatgccgcagcatggttcttacaatcaa
ggccagcagttgcagggggtaaggatgccgcaaagtcagccgcagcacacgcaacagtcc
cctggcttccatcaacctgtccaggcgccacaggtgctgcaagctccgcagtctcaaggc
cttcagatgtcccctccgcagggccaactccagcatggcttcccgttcacccctcagcag
gggaaacagccgcagcatggccacgttggtgcccatatcagccaattgtcacatgggcaa
catagtagcgaggtgaagggtgatgcaggaggtcttgaaggaaagcaggctggcttttcg
ttaccacttagtcagcagcgtggccaagctcctcttccaaatcagcagttgccttatagt
catcaacgtcctgaagcccatagtcaactgaatattcatggagttggagggccagcatat
cctgcaaagcaccatcttggtgggttatccccacgcgagactaacaacactagtttttcg
agctcgcctgctcacatacatcaaggtggactggatacgaactaccggcaacaactggct
agcagccatgtagctcccaatcatattgctccttcaccaggtcgacctccagtgggtttc
aagaggggcaatagtgaagatcagtttgaaaaacatgagcctcacacgtctgggaggttt
gatggaataagtgctccccatcaacagccaaaacttgccgctcttccgccttcccaaaat
catctgcaggatacgaggaacggcccaccatatcctcagcctgataactttggtggttat
aacatggcacctccacatttagtacaaaacccacttaacaatggtccgtttcctgtcgga
gctttaacaagaccaccacccggaacatttcctcctccggatttccctagtgttgcttca
gttgatgcatatcgtcagcaccatgaagtcacggcagtgggtgagaatgttcctcctccg
tttatgacatttgaggctactggattccctccagagatactgagagaggtccatgctgct
ggcttcttaaaccccactccgattcaggctcaaacatggcctgttgcacttcaaaaccgg
gatatagtagctattgccaagacaggatcagggaagacactgggataccttattcctgct
tttgtacatctgagtagatgccaaaacaatccaatgttgggtcctacagtgttggttttg
gcacctacacgtgagcttgcttcacagatacaagatgaagcaattaagtttggtcgatca
tctagagtatcatgcacttgcctgtatggaggagctccaaagggccctcagcttagagaa
cttgagcgtggagcagatattgtggttgctacaccgggacgactaaatgatattctggag
atgaggaagataagcctccatcagatttcattacttgtgcttgatgaagctgaccgcatg
cttgacatgggttttgagccacaaatacggaagattgtggatgagattcctcgtagtaga
cagactctgatgtacactgccacttggccaaaggaggttacaaaaatagctggtgattta
ttgagagatcctgtccagatcaatattggaagcattgatgaacttgttgccaacaaatcc
atcacgcagtatgtagagatggttccaccaatggataagcaacaccgtttggagcagatt
cttagagctgaagaaaggggttcaaagatcatcatattttgctcaacaaagaaaatgtgt
gaccagcttgctcgtggcattggtcgtagttttggcgctgcaagcattcatggtgataaa
tcgcagggtgaaagggatcagattctcaatcagtttcggactggtcgtgttccagtatta
gtagccactgatgttgctgctcgtggactggacatcaaagacattagggtggtaatcaat
tatgactttccaactgggatcgaagactacgtgcatcgcatagggcgcacaggaagggct
ggggcaactggagttgcatacactttcttctctgagcaagattggaaatatgctgctgac
ctggtcaaagtcttggagggtactagtcaggaggtacctccagcgctgcaacagatggct
gctcggggtgcacccggaggtccaagaaaccaggctggtggcatgagccgttgggatggt
cctggtggtggtaatcgttttgaatctgccgctggcggccctggtggttacggtggagtt
agggaggtccctggggtctttggtggccgggatggcccaggtggatttgttgatcggggt
ggcccaggtggatttgttgaccgagatggccccggacgcttcgctggccgggagggccct
gatggctttggtggtcgggatggccctggtggctttggtggacgcatgggtcctggtgga
tttgggggacgggagggtcctggtggatttggtggacgggagggtcctggtggatttggt
ggacgtgatggtcctggaggatttggtgggcgggatggtcctggacccagtggcttcagt
gggagagggggccgtgggcctgatggctttagcaggcgaggtggaggaagtcctggtaga
tttggtggtagcggtggcaggggcgattctcctggttttggtggacgtggtaggggtgat
tcttctggttttggtggacgaggccggggtgatttctctggtggacgtggtggaagaggg
cgtggatttggaggacggggacgttctgatcgtttcatctcagatggacgtggaagatat
gatgatcgtcgaggatttggtgacaagggtcggggcaggagctacagccgtagcccagat
agaggccgctcgcgaggctatgatagaagaagtgatagcaggagcctaagtagtaggagc
agaagccgtagcagaagctggtcacgcagcaggagccgcagcaggagttggtcacgtagc
cggagtcgcagcaggagcaggagccggagccgtgatcagggtgcaggaccagaacgcagg
ccacgggcaagatctggctttgatgtgccgccacctgcaactgaagctggacctgtttta
gctgcgcctgtacctgtacctggaccagtagctgatgttgctgcactcaaacctggacaa
tcgctcgccgatgcatctgatatgtcacctatgtcgcctggtggcttggtccaggtccag
gagggtggaccattcatgggtgggggcgatgccaaggtcagcagcgcgcaagctgaccag
ccttcccaagggaaagatcttgtagtaccaccaagcttttctgcagctgaaaattttcca
ggtcctgcagttcagcaggatgccccatga
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integrated database retrieval system
