Lolium rigidum (rigid ryegrass): 124666954
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Entry
124666954 CDS
T09103
Name
(RefSeq) tRNase Z TRZ3, mitochondrial-like
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lrd03016
]
124666954
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
124666954
Transfer RNA biogenesis [BR:
lrd03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
124666954
Prokaryotic type
124666954
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_4
Anti-Pycsar_Apyc1
Lactamase_B_2
TVHS-like
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
124666954
NCBI-ProteinID:
XP_047060245
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All DBs
Position
6:361029064..361041823
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AA seq
1485 aa
AA seq
DB search
MSSGKDAAVAFNKTRAEGKDGRKDRSMELKNRRANPISTTSYVQILGTGMDTQDTAPSVF
LFFDKQRYMFNAGEGLQRFCTEHKIKLSKIDHIFFTRVCSETAGGLPGLVLTLAGMGDEG
MSVNIWGPSELDFLAGAMKSFIPNRAMLHTHSFGVDHSASSQPTVIIDDEVVRISAMFVK
PRYNNEAKSSTDINSKPGDTAIVYSCELAEIKGKFDPAKAAALGLKPGPKYRELQLGNSV
RSDKIDTMVHPSDVLGPSIPGPIVLLVDCPTQYHMCELFLLQSLSQFYEDSSCQTENAKK
VNCIIHLGPSSVTNTVEYQNWMKSFGTTQHIMAGHENKNMEIPILKGSARISSRLNFVCP
QLFPSSGFWPVEPSNGIELEKNKSTSSQACESVTAENLLKFRLRPYAQLGLDRASIPSLC
SHEDIVDELISEIPEIKEVPEQISKFWQSSVDQRSALPPDGKHMLMVEEPWINKDSCLPD
VLDEHGNSTKSQDESSLRESGWRKRPKGNSETPCCVKNATREDLEITFLGTGSSQPSKYR
NVSAIYVNLFAQGGMLLDCGEGTLGQLKRRFGVSGADELVKNLRCIWISHIHADHHTGLA
RVLALRSKLLNGVPHKPLLVIGPGPLLRFLNAYSTLEDLDMQFLDCRRTLKASVEELLTD
NGTESPTSQVENTMFAPGSRMENYNKKPASPRDTTALANLKEVLQESGLEILYSVPVVHC
PQAFGVVLRAKEKVSSAGKAIPGWKVVYSGDTRPCPALVDASRDATVLIHEATFEDSMKD
EAIARNHSTTKEAIAVGTSAGAYRIILTHFSQRYPKIPVFDEDDMDKTSIAFDLMSVNLA
DLPVLPKVLPHLKLLFKDEMVVEESDEALRLIKYAVGKSGTDFKREMQRHSAAMRQLVHY
KGLPDPLKGDALNKAVRETANEAIAAIFSTEDPKAVVVTEGLGKRIQGFGNTNYEPSRDD
KKSFLSELSEVVGIGGASIKQGLSNFAATHSITNENGSMYKSPIRRSLTTETDRYGRYDP
SEIQGESRATSGASKNASSGSWGPSPSSSVSAGDTGSSQSGVKTREERLLETIVTASGVR
LQPTRDALQIFLTEASKLDAVALSRALENKLNSPLWQVRMKAICVLEAVVRKHDTDPYSI
VASYFSENSASVVRCCELPQVSLREKASKVLNLLVGEQPTGNKHLSESKTSLPTVQMPDL
IDTGDHDDLGTPSSAQEISEQMMGNSTHVSSVDDLLGGEPIGNISATSNGNGSDPFADVS
FHEEEIKETNDLFSGMTVEEKSSAFVHDNSVMDGNAMPDIFGSSPEPLFQERVDDKGTVD
DLMAGLNLNGTAQAQPGVKAETHSNLSGSQFFDMNSQTSHVASAAALNGILGQSSFYQQV
PVQYNMSPQMFGQSFPGQQLNYGAMEALLAQQQQLLQNMGNFNAGLGHLSFNSMNGANAA
GMPDIFNSSNQPQHHVAVMSNSKKEETKAFDFVSDHLAAARGSKK
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcggcaaggacgccgcggtggcgttcaataagacgcgggccgagggcaaggac
ggcaggaaggacaggagcatggagctcaagaaccgcagggccaaccccatcagcactacc
tcctacgtgcagatactcggtacaggaatggacactcaggatactgcgccttccgttttt
ttgttctttgacaaacaaagatatatgtttaatgctggcgagggtcttcagcgtttctgc
actgaacacaagataaagttgtcaaagattgaccacatctttttcactcgtgtgtgctca
gaaactgcagggggccttccaggcttggtgctaaccctggctgggatgggagatgagggc
atgtcggtgaacatatggggcccttcagaacttgattttttggcgggtgcaatgaaatct
tttatcccaaatagggcaatgcttcacacgcacagctttggtgtggatcacagtgcatct
tcacaacctactgttattattgatgatgaagtagttcgtatatcagcaatgtttgtcaaa
ccgaggtacaataacgaagccaagagttcgacagatatcaactcaaagcctggtgatact
gctatagtctactcatgtgagttggcagaaattaaaggaaaatttgaccctgctaaagct
gctgctcttggtcttaagcctggaccaaagtatcgtgaacttcaacttgggaactctgtg
cggtctgataaaattgatacaatggttcatccaagtgatgttcttggcccgtcaattcct
ggaccaatcgtgcttctagtggattgccctacacaatatcacatgtgcgaactgtttttg
ctgcaatcgcttagccaattttatgaagattcttcctgccaaacggagaatgccaagaaa
gtaaattgcataattcacttaggtccatcttctgtgacgaacaccgttgaatatcagaac
tggatgaaatcttttggcaccacacagcatatcatggcagggcatgaaaataaaaacatg
gaaattcctatcttaaaaggtagtgcaaggatatcttcacgccttaattttgtatgccct
caactcttcccatcctctggattttggcctgtggaaccttcaaatggcatcgaattagag
aagaataagagtacttcatcccaagcctgtgaaagtgtgactgcagaaaatctgctgaag
tttcgtctgcgtccatatgctcaactggggctggatagagcttctattccaagcttgtgt
agtcatgaagacattgtagatgagcttatttctgagattcctgagattaaagaagttcct
gaacaaattagcaagttttggcaaagtagtgtagaccaaagaagtgcactgccacctgat
ggcaagcatatgctgatggttgaagagccatggattaataaagactcctgtcttcctgat
gttttagatgaacatgggaattcaaccaagtctcaagatgaaagtagtttgagagaaagt
ggctggagaaagcgcccaaagggcaattcagagaccccctgctgtgtgaagaatgcaaca
agagaagatctagaaattacatttttgggtacgggttcatcccagccttcaaagtatcga
aatgttagtgccatatatgttaacctgtttgcacaaggaggtatgcttcttgattgcggt
gaaggaactttaggacagctgaaaaggaggtttggtgtaagcggtgctgatgaacttgta
aagaatttaaggtgcatctggatttcccatattcacgctgatcaccacaccggtctcgct
agagttcttgccttgaggtcaaaattactaaacggcgttcctcacaaacccttgctcgtg
attggaccaggaccactcctgagatttctaaatgcatattcaacacttgaagatcttgat
atgcagttcctagactgcagacggaccttgaaggctagtgttgaggaacttcttactgac
aatggtacggaatctcccacaagtcaagttgagaacaccatgtttgctcctggaagcaga
atggagaactacaacaagaagcctgcaagtccgagggacactacagctctcgctaatttg
aaagaggttctacaggaatcaggtttggagattctgtacagtgtccccgttgtacactgt
ccacaggcgtttggagttgtcttgagagccaaggagaaggtgagcagtgctggaaaggcg
attccagggtggaaggttgtatattcaggtgacacgcggccctgcccggctcttgtagac
gcgtccagagatgccacagtgttgatacacgaggccacgtttgaggacagcatgaaggac
gaagcgatcgcgaggaaccacagcacaaccaaggaggccatagcggtcggcacatcggcc
ggagcgtaccgcataatcctgacccacttcagccagcgatatcctaaaatcccagtcttt
gacgaggacgacatggacaagaccagcatcgcgtttgacctgatgagcgtaaacctcgcc
gatctgccggtgctgccgaaggttctgccgcacctgaagctcctcttcaaggacgagatg
gtggttgaagagtctgacgaggctttgcggttgattaaatatgcggttggaaaatctggc
accgacttcaagcgggaaatgcaacggcattcagcagctatgcgtcagcttgttcactac
aaaggactccctgaccccttaaaaggggacgcccttaataaggctgtccgagaaactgcg
aatgaggctattgctgctattttctccaccgaggaccctaaagctgttgttgtgacggaa
ggtctaggcaagcgcatacagggctttggaaatactaattatgagccatcaagggatgac
aagaagtctttcctcagtgaactaagtgaagtagtgggcattggtggtgcgtccatcaaa
cagggtttgagcaactttgcagccacacattcaataacaaatgagaatggtagtatgtac
aagagccccattcgtaggtctctgaccacagaaactgatagatatggtaggtatgatcca
agtgaaattcaaggagagagccgtgccacatctggtgcttcaaagaatgcgagttctggt
tcttggggtccaagtccgtcaagttcagtatcggctggtgatactggctcaagtcaatca
ggtgttaagacacgcgaggagagacttttggagacaatagttactgcaagcggtgttcgg
ttgcaacctactcgagatgctctgcagatatttctaacagaagcctccaaattggatgca
gttgctttgagtcgtgcccttgagaacaaactcaattctccactgtggcaggttcgcatg
aaggctatctgtgtgctggaagctgttgtaaggaaacatgatactgatccttattccatc
gttgcttcatatttcagtgagaacagtgcttctgttgtcagatgttgtgaactgcctcaa
gtttctctcagagaaaaggcctcaaaagtattaaatcttctggttggggaacaacctacc
ggaaacaaacatctttcagaatcaaaaacttcactacccactgttcagatgcccgatttg
attgatacgggggatcatgatgatcttggaactccgagttcagctcaagaaatcagtgag
cagatgatggggaatagcacacatgtttcttcagttgatgatttgcttggtggtgaacct
attggcaatatcagtgccactagcaatggtaacggaagtgatccatttgcggatgtatca
ttccatgaggaagagattaaggagacaaatgacctattctcagggatgacagtagaggaa
aaatcctcagcattcgtgcatgataactctgtgatggacggaaatgcaatgccagatata
ttcggcagcagccctgagccgttgttccaagaaagagttgatgacaaaggaactgtcgac
gatttgatggctggtttgaaccttaatggcactgcccaagctcagcctggagtaaaagca
gaaactcatagtaatctcagtggttcacagttctttgacatgaacagccagactagccat
gtggcgagtgctgcagcactgaatggtatccttggccaaagctccttttatcagcaggtt
cccgtgcagtacaacatgtcaccacaaatgtttggtcaatcatttcccgggcagcaatta
aattatggtgccatggaagctcttcttgctcagcagcagcagttactacaaaacatggga
aatttcaatgctggacttgggcatttgtctttcaattcaatgaacggtgcaaatgcagct
gggatgccagatattttcaattcaagcaatcaacctcaacatcatgtggctgtgatgagc
aattccaagaaagaagaaactaaagcttttgactttgtctcggatcaccttgcagcagca
cgtggctcgaagaagtag
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integrated database retrieval system
