Lolium rigidum (rigid ryegrass): 124667170
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Entry
124667170 CDS
T09103
Name
(RefSeq) cell division control protein 48 homolog D-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124667170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124667170
03009 Ribosome biogenesis [BR:
lrd03009
]
124667170
04131 Membrane trafficking [BR:
lrd04131
]
124667170
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrd04147
]
124667170
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124667170
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
124667170
Membrane trafficking [BR:
lrd04131
]
SNARE
SNARE associated proteins
Others
124667170
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124667170
Exosome [BR:
lrd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124667170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_33
AAA_16
AAA_5
AAA_14
TIP49
AAA_22
CDC48_2
NPHP3_N
AAA_17
RNA_helicase
nSTAND3
Mg_chelatase
ABC_tran
Viral_helicase1
AAA_28
Parvo_NS1
Zeta_toxin
NB-ARC
ATPase_2
AAA_7
AAA_18
Vps4_C
TsaE
NACHT
SLFN-g3_helicase
DUF815
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
124667170
NCBI-ProteinID:
XP_047060444
LinkDB
All DBs
Position
6:complement(146849604..146851961)
Genome browser
AA seq
785 aa
AA seq
DB search
MASTLSSKKAANRLVVEEATTDDNSICNLHPATMEELSIFKGDIVLLKGKRRRTTVCIVV
PDETCEEHKLKLNKVARSNLRVRIADVVSVHLCPDAKYGRRVSVLPVDDTIEGITGNLFE
AYLKPYFVDAYRPVHKGDLFLTRGGMRSVEFKVIEIDPPVDYCIVAGDTEIFCDGEPVKR
EDEERLDDVGYDDVGGMGKQMNQIRELVELPLRHPQVFKCLGVKPPKGILMYGHPGSGKT
LIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK
RDKTHGEVERRIVSQLLTLMDGMKARAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP
DEVGRLEVLRIHTKNMKLSEDVNLEVVAKDTHGYVGADLAALCTEAALQCIREKMDVIDL
EDDTIDAEILNSMAVTNDHLKTALVGTNPSALRETVVEVPNISWSDVGGLDGVKRELQET
VQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF
GESEANVRKIFDKARQSAPCVLFFDELDSIAMQRGGSVGDAGGAADRVLNQLLTEMDGMN
AKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRHQIFKACLRKSPVAKDIDL
GALARFTTGFSGADITEICQRACKYAIREDIEKDIERQRLGKEAMEVDGGQEDEMAEIKA
AHFEESMKYARRSVSNGDIRKYQSFAQTLQQSRGFGTEFRFPAQPQASVNAFDTAVAADE
DDLYN
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcacgttgtcttcgaagaaggcggcgaaccggctggtggtggaggaggcaacc
acagacgacaactccatctgcaacctccacccggccaccatggaggagctctccatcttc
aagggtgacatcgtgctgctcaagggcaagcgtcgccgcaccaccgtctgcatcgtcgtc
cccgacgagacctgcgaggagcacaagctcaagctcaacaaggtggcccgttctaacctc
agggtgcgcatcgccgacgtcgtctccgtgcacctctgccccgacgccaagtacggcagg
cgcgtgagcgtcctccccgtcgacgacaccatcgagggcatcacaggcaacctgttcgag
gcctacctcaagccatactttgtcgacgcctaccgcccggtgcacaagggtgacctcttc
ctcacacgtggtggtatgcggagcgtcgaattcaaggtgatcgagatcgaccctccggtc
gactactgcattgtggcgggggacacggagatcttctgcgacggcgagccggtgaagagg
gaggacgaggagaggctggacgacgtcggctatgacgacgtgggcggcatgggcaaacag
atgaatcagatcagggagctggttgagctgccgcttaggcatccgcaggtcttcaagtgt
ctcggcgtcaagcctcccaagggcatccttatgtacggccatcccggctccggcaagacg
ttgatcgctcgtgcggtggcaaacgagacaggggccttcttcttctgcatcaatggccct
gagatcatgtccaagatggccggagagagcgagagcaacttgaggaaggcgtttgaggag
gccgagaagaacgcgccgtccatcatcttcattgatgagattgactccattgctcctaag
agggacaagacacacggtgaggtcgagaggcgtattgtgtctcagctgctgacgctcatg
gacgggatgaaggcacgagcgcacgtcatcgtaatgggcgccacaaatcgtcccaacagc
atcgatcctgctctcaggcgcttcgggaggttcgaccgtgagatcgacattggcgtgccg
gacgaggttgggcgccttgaggttttgcgcatacacaccaaaaatatgaagctctcggag
gacgtcaacctggaagtggtggccaaggacacgcacggctacgttggcgccgacttggcc
gcgctctgcacggaggcggcgctgcagtgcatcagggagaagatggacgtgatcgacctc
gaggacgacaccatcgacgccgagatcttgaactccatggccgtcaccaacgaccacctc
aagactgctctagtcggcactaatccttcggcgcttcgtgagaccgtcgtggaggttccc
aacatcagctggagcgacgttggtggccttgatggcgtcaagcgagagctgcaggagacc
gtccagtaccccgtggagcaccccgagaagtttgagaagtttggcatgtcaccttccaag
ggcgtcctcttctacgggccgccaggctgcggcaagacgctgctggccaaggcgatcgcg
aacgagtgccaggccaatttcatcagtatcaagggtcccgagctgctcacaatgtggttc
ggcgagagtgaggccaacgtgcggaagatattcgacaaggcgaggcagtcggcaccctgc
gtgctcttcttcgacgagctcgactcgatcgcgatgcagcggggcggcagcgtgggagac
gccggcggcgcggcggacagggtccttaaccagctgctgacagagatggacggcatgaac
gccaagaagacggtgttcatcattggtgccaccaacaggccggacatcatcgactcggcg
ctgctccgtcccggtcgcctcgaccagctcatctacattccgttgccggacgaggcctcg
cggcaccagatcttcaaggcctgcctcaggaagtctcccgtggccaaggacatcgacctc
ggcgcgctcgcgaggttcacgacgggcttcagcggcgccgacataaccgagatttgccag
agggcatgcaagtacgccatcagagaagacattgagaaggacatcgagaggcagaggctt
ggaaaagaagccatggaggtggatggcgggcaggaagatgaaatggctgagatcaaggcg
gctcacttcgaggagtcgatgaagtacgcgaggaggagcgtgagcaacggcgacatcagg
aagtaccagtcgttcgctcagacgctgcagcagtccaggggctttggcaccgagttccgc
ttccctgcgcagccacaagcttctgtcaacgccttcgacaccgccgtggcagctgatgag
gatgatctgtacaactga
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integrated database retrieval system
