Lolium rigidum (rigid ryegrass): 124667419
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Entry
124667419 CDS
T09103
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like isoform X1
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124667419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124667419
03036 Chromosome and associated proteins [BR:
lrd03036
]
124667419
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124667419
Coactivators
SAGA/TFTC/STAGA complex
124667419
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
124667419
STAGA complex
124667419
TFTC complex
124667419
SAGA complex
124667419
SLIK complex
124667419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
124667419
NCBI-ProteinID:
XP_047060660
LinkDB
All DBs
Position
6:26144280..26149193
Genome browser
AA seq
546 aa
AA seq
DB search
MSIVPKETIEVIAQSVGIPTLPADVSAALAPDVEYRLREIMQEAIKSMRHAKRTVLTADD
VDSALTLRNVEPVYGFASGDPLRFKRAVGHKDLFYIDDREVDFKEIIEAPLPKAPLDTAV
VAHWLAIEGVQPAIPENPPIDAISAPTENKRTEHVKDDGLPVDIKLPVKHILSRELQMYF
DKIAELTMSRSNTPIFREALVSLSKDSGLHPLVPYFSYFIADEVTRSLADLPVLFALMRV
VQSLLRNPHIHIEPYLHQLMPSMITCIVAKRLGHRLSDNHWELRDFSANLVASVCRKYGH
VYHNLQIRLTKTLIHAFLDPHKALTQHYGAVQGISALGASAIRLLLLPNLETYMQLLDPE
LQLEKQKNEMKRKEAWRVYGALLCAAGKCLYERLKLFPGLLSASTQPALRSNKRVATNNP
NKRKSITDLSASQPPLKKMASDALMSSMGSAAPVTMPGTMDGFSAQLPNPIMMQASSSGQ
MADGIAAAGPIQRDQEGNHHAQRVSTVLRQAWKEDQDAGYLLASLHDVFGEAIFSFIQPP
EISFFL
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgttcccaaggagacgatcgaggtgatcgcccagagcgtcggcatccccacc
ctccccgccgatgtctccgccgccctcgcccccgacgtcgagtaccgcctccgggagatc
atgcaggaggccattaagtctatgcggcatgcaaagaggacagttctgaccgccgacgat
gttgacagtgctctcaccctcaggaatgttgagcctgtgtacggatttgcttctggtgac
ccgttgcggtttaagagagctgtgggccataaggatcttttctatattgatgacagggag
gtagacttcaaagagattatcgaagctcctctaccgaaagctcctctcgacacagcagtt
gtagctcactggctagctatcgagggcgttcagcctgcaattccagagaatcctcctatc
gatgcaatttcagcaccaacagaaaataaaaggactgagcatgtgaaggatgatggacta
ccagttgacatcaagcttcctgttaaacatatattatctagagaactccagatgtatttt
gataaaatagcggagcttactatgagtcgatcaaacacccctattttcagagaagcacta
gtgagcttgtcaaaagactcaggccttcacccactggttccttacttttcgtatttcatt
gcagacgaggttacgaggagtttggctgaccttcctgttctctttgctctcatgcgtgtt
gtccaaagccttctccgcaatccacatattcatattgaaccatatttgcatcagttgatg
ccatcaatgatcacatgcatcgttgcaaaaaggctggggcataggctttctgataaccat
tgggagcttagagacttctctgccaacttggttgcttcagtatgtcggaaatatggccat
gtgtatcacaatctccaaatccggttgacaaagacattgatccatgcatttcttgatcct
cataaagcattgacacaacattatggtgctgttcaagggatatctgcattgggggccagt
gctattaggcttctgcttttgcccaacctcgagacatacatgcaacttttggatccagaa
ttgcagcttgagaaacagaaaaatgaaatgaaaagaaaggaagcatggcgtgtttatggt
gccctgctgtgtgctgcaggtaaatgcttgtatgagcggctcaagttatttcctggtttg
ctctctgcctcaactcagccagctttgaggagtaataaaagagttgcaactaacaaccca
aataaacggaagtctattacagatctctctgcatcccagccacctctaaagaagatggca
tcggatgcattgatgagctccatgggttcagcagctccagtaaccatgccaggaaccatg
gacgggttctctgcccagctacccaaccccatcatgatgcaagcatcatcctctggacag
atggcagatggcatagcagcagcaggcccgatccagagagaccaggaaggcaaccaccac
gcgcagagagtctccacggtgctgaggcaggcctggaaggaggatcaggatgccgggtat
ctcctggcatcgttgcacgacgtgttcggcgaagccatcttctcatttatccagccgccc
gagatatccttcttcctgtag
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