Lolium rigidum (rigid ryegrass): 124667735
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Entry
124667735 CDS
T09103
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124667735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124667735
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124667735
mRNA degradation factors
5'-3' decay
Decapping complex
124667735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
124667735
NCBI-ProteinID:
XP_047060945
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All DBs
Position
6:complement(102968000..102975365)
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AA seq
804 aa
AA seq
DB search
MLGVEADSGGGGGASSSSAADSFDAGQYAFFGKEPREGLELGCLEVDGGHANGGGFSGAE
EGLYRLSSVGEEIDNLSNLSDVDDLASTFAKLNRTVSGTRNPGVIGDRRSISRGSSLTVD
WAEDAEFPNYQDILENEEFQDGKRWWSQSHSMVQPGDSKPLSRTTSYPQQPLQHRLSEPI
TAPKSPPFTSFPPPGGRSPYPAQGLTRHGSIPSFGAGVQMGSPSMQLPGSPYNMVGLPHG
LPYGGSMPFGGPNLHVSNPMQNDWSNQANLFSGEHLNLLPNLLQKQISLPNNPMSSLLFS
QQQQRLAQLQPSHQNYLNIPPHLFYHHHPPEMTGRFESATSLPSSRDKRSRSGRGKHSLR
FSQPPSDTTGTQNGESGGLKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQACIAK
KGTSTKQKTNFAPTSMKDLPSKSRSSGDQHAYLQVDALGRVSFSSIRRPRSLLEVDLPSS
GEGSHDQKSSVRSLEKEPMLAARVTVEDAIGLLLEVEDIDRLLQSSQAQENSFQLRRRRQ
VLLEGLAASLQMVDPLGPSKSAQSSGLALKDDIVFLRIVSLPKGRKLLARYLRLVVPGSE
LTRIVCMAIFRHLRFLFGGLPSDSSAAETTVALAKTVSSCVHHMELGALSACLAAVVCSS
EQPPLRPLGSSAGDGASLIIKSVLDRATELLTDQNTVSSYTPSNRALWQASFDAFFGLLT
KYCLSKYESILQMFVMQTSGSVIGSEASRATSREMPVELLRASLPHTNEQQRQMLLDFAQ
RTTPASSFNPPGASGHITSESVPG
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcgtcgaggcggacagcggcggcggcggcggcgcctcctcctcctccgccgca
gatagttttgacgcggggcagtacgccttcttcgggaaggagccgcgcgaggggctcgag
ctcggatgcttggaggttgacggtggccatgccaatggcggtggattcagcggggcggaa
gaggggctgtaccgcctctcctcggttggagaagagattgataatctaagcaacttgtcg
gacgtcgatgatcttgcgagcactttcgctaagttgaaccgaacagttagtggaacacgg
aatcctggtgttattggtgacagacgatccatctcaagaggaagttctttaactgttgat
tgggctgaggatgcagaatttccgaattatcaggatatattagaaaatgaggaattccag
gatggtaaaagatggtggtcgcagtcacattctatggtgcagccaggggactctaaacca
ttaagccgaacaacctcctatcctcagcagccactgcagcaccgtttaagtgaacctatc
acagcaccaaagtctcctccatttacctcgtttccacctccaggtggcagatcaccgtat
cctgctcaaggtcttacacgtcatgggagcattccatcatttggagcgggagtacagatg
ggttctccgagcatgcagctgccaggttctccgtataatatggttggattacctcatgga
ctaccatatggaggaagcatgccttttggtggtcctaatctgcatgtaagcaatccaatg
caaaatgactggtccaaccaggccaacctgttcagcggggagcaccttaatctactgcca
aacttattacagaaacaaatatcacttccgaataacccaatgtcatcactgctattctct
cagcaacagcagagattggcgcagctccaaccatcacatcagaattacctgaatatacca
ccccatctgttctaccaccatcatcccccagagatgacaggcaggtttgaatctgctaca
agtcttccttcatcaagagacaagagatcacgatcaggaaggggaaaacacagtttgcgt
ttttctcaaccaccgtctgataccactggtactcagaatggtgagagtggtggactaaag
ttcagatccaagtacatgtcatctgaagagattgagtctatcctaagaatgcagcactca
gcaagtcacagcagtgatccttatgttgttgattattaccaccaagcttgcatcgcgaaa
aagggtactagtactaagcaaaagacaaatttcgccccaacatcaatgaaagatttgcct
tccaagtcccggtcaagtggtgatcagcatgcatatcttcaggttgatgctcttgggaga
gtttctttctcttccatacgcaggcctcggtctcttcttgaagttgaccttccttcatca
ggtgagggttctcatgatcagaagtcttctgtgaggtctctggagaaagaaccaatgctg
gcagccagggtcactgttgaagatgccattggtcttcttcttgaggtggaagatattgac
aggctcctgcagtctagccaggcacaggagaacagtttccaactgaggcgaaggcgacaa
gtcctccttgaaggtctagctgcatcacttcagatggtcgaccctcttggtcctagcaag
tctgctcaatcatctggtttagccctgaaggatgatattgtcttccttcgcattgtttct
cttcccaaaggacgtaagcttctggctcgttacctccgacttgttgtccctggaagtgag
ttgacgaggattgtatgcatggctattttccgacatctgaggttcttgtttgggggttta
ccatcagattcgagtgcagcagagacaacagttgctctggcaaagactgtttcgtcttgt
gttcaccatatggagctcggcgctcttagtgcttgccttgctgcagtagtctgttcatct
gaacagccacctctccgtcctcttggtagctctgctggtgatggggcttctcttattatt
aaatcagtactggatcgagcaactgaattactgactgatcagaatactgtatccagctat
accccgtcaaacagagctctctggcaggcatcattcgacgctttctttgggcttctgaca
aaatactgtctcagtaagtatgaaagtattctgcagatgtttgtcatgcagacatcgggc
tctgtcattggatccgaagcctcccgagcaactagcagggaaatgccagttgaactacta
cgcgcaagccttcctcatacaaacgaacagcaacgccagatgctgctcgatttcgctcag
agaaccacgccagccagcagttttaatccccctggtgctagtggacacatcacttctgaa
tcagttcctggttga
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