Lolium rigidum (rigid ryegrass): 124668072
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Entry
124668072 CDS
T09103
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124668072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124668072
03012 Translation factors [BR:
lrd03012
]
124668072
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124668072
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124668072
Translation factors [BR:
lrd03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124668072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
R3H
DEAD
OB_NTP_bind
HA2_N
nSTAND3
Ank_5
AAA_19
AAA_22
Ank_2
ATPase
ResIII
Rad17
AAA_16
PhoH
AAA_23
Myosin_head
AAA_25
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
124668072
NCBI-ProteinID:
XP_047061230
LinkDB
All DBs
Position
6:102632987..102641974
Genome browser
AA seq
1145 aa
AA seq
DB search
MMRFRAVLREFRASDEEVYTFEPSLSKAERAAIHQMCRKMGMNTKSSGNENVRCLSVYRR
NNKKDTQGPAEGPSRLGFSKEATQVLLDLFTHYPPDEAELNGDAVKKSGKKAARIPWKRD
GAFCRPTMSGRDIAKKVEMLTSNTSGQLRKIAEDRSKLPISSFKDHICSTLEKHQVVLIS
GETGCGKTTQVPQYILDYVWGKGESCKIICTQPRRISATSVAERISAERGEAVGNTVGYK
IRLESKGGKNSSIMFCTNGVLLRLLIGRVTNIQTAQNVTHSFDDPIMEITHIIVDEIHER
DRYSDFMLAILRDLLPMYPHLHIVLMSATINADRFSQYFNGCPVIEVPGHTYPVKTFYLE
DVLSILQSVDDNHLHPASDDLELKTVLTDEYKSSLDEVISMALVNDEFDPLIELISVEQN
PEVFNYSHSETGVTPLMVFAGKGQLGDVCMLLSFGVDCSARDHDGKSALDWSQQENQKEV
YEVIKKHMDCTPAKSPEENDLLNKYLATISPEHIDTVLIERLLKKLCADSSEGAVLIFLP
GWEAINKTRERLLASSIFQDSSKFHVLSLHSMIPSSEQRKVFQRPPAGVRKIILSTNIAE
TAVTIDDVVFVIDSGRMKEKSYDPYNSVSTLQTSWVSRASARQREGRAGRCQPGTCYHLY
SRLRAASLQEYQTPEINRMPIEELCLQVKLLDPKCRIADFLKKTLDPPVAETVKNAITVL
QDLGALTQDEQLTDLGEKLGSLPVHPSTSKMLLFGILMNCLDPALTLACAVDYRDPFVLP
VDPNQRKRADAAKIELASLYGGFSDQLAVVAAFDCWRCAKDTRQKALFCSQYFVSSTTMT
MLSSMRKQLQNELAQRGFLPAEASACNINAKAPGIISAVLMAGAYPMVGKLLPPCKNARS
TVVETASGAKVRLHPSSANYNLSLNNSSGYPLVIYDEITRGDGGSMSIKKCSVVGSYPLL
LLASEMAVAPPDGDNHEEEGSSGDEVIMSSPDNTVSVVVDRWLRFHATALDVAQMYCLRE
RLVSAILFKVQHPQHVLPPALGATMYAIACILTYDGLPAMVQCNTGAFDSRPAERRGGGY
IRPNDFLMSLLTDRVAPLAEYLSPENILPPSAGGRYSLPSKTVPGPSAPQSSKRQRASAR
RPRPQ
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgcttcagggcagtgctcagggagttccgggcctccgacgaagaggtgtacaca
ttcgaacctagtctatccaaggcagagcgtgccgcaatccatcaaatgtgtagaaagatg
ggcatgaatacgaaaagttccgggaatgagaatgtccgatgccttagtgtttacagacgt
aacaataagaaagacacacaggggcctgcagaaggccctagcagacttggattttctaaa
gaagcaacacaggttttgctagatttatttacgcattaccctcctgatgaagctgaatta
aatggtgatgctgtcaagaaatctggcaagaaggctgcaagaattccatggaaaagagat
ggtgccttttgcaggccaactatgagcggacgtgatatagcaaagaaggttgagatgctt
acatctaacacaagtggacagctgaggaagatcgctgaagacagatccaaacttccgata
tcatccttcaaggatcacatttgttctactctggaaaaacaccaggtggttcttatttct
ggagaaacaggctgcggtaaaactacccaggttcctcaatatatcttggattatgtgtgg
ggcaagggtgaatcatgtaagatcatatgtactcagccgcgacggatatcagctacttca
gttgccgaacgaatatctgctgaaagaggagaggctgttggtaacacagttgggtacaag
atacgtttggagtcaaaaggagggaagaattcgtcaatcatgttctgtactaatggtgtt
cttttgaggctgttgataggcagagtaactaacattcaaacagcacaaaatgtgacacac
tcatttgatgatccaattatggagataacacacatcattgtggatgaaatccatgaaagg
gataggtattccgatttcatgttagctatcttgagagatttgctaccgatgtatccgcat
cttcatatagtgctcatgagtgcaacaatcaacgctgaccgtttttctcagtatttcaac
ggatgcccggttattgaagtccctggccatacctaccctgttaaaactttctatttggag
gatgtgctttctattctgcaatctgtagatgataatcatcttcatcccgcatcagatgat
ctggagctgaagactgtgttaaccgatgagtacaaaagctcactggatgaagtaattagt
atggctttggtcaatgatgaatttgatcctctcattgagcttatttctgtagagcagaac
ccagaagtcttcaactactcacattcagaaactggtgtgacacctttgatggtttttgct
ggaaaaggtcaacttggggatgtctgcatgcttctatcatttggtgtggattgttctgca
cgtgatcacgatggaaaatctgcattagattggtctcagcaagagaatcagaaagaggtt
tatgaagtaataaaaaaacacatggattgtactccagcaaaatcacctgaagagaatgat
cttcttaataaatacttagcaactatcagtccagagcacatagatactgtgctgatagaa
cgcttgcttaaaaagttatgtgctgattcaagtgaaggagctgtattgatcttccttcct
ggttgggaagctataaataaaacaagagagaggttacttgcttcttccatctttcaggat
tcatcaaaattccatgtgctgtctctccattccatgatcccatcttcagagcagagaaag
gttttccaacgtccacctgctggggttcgtaaaattattctctcaacgaacatagcggag
actgcagtaacaattgatgatgttgtatttgtcatagatagtggaagaatgaaagagaaa
agttatgatccatataatagtgtgtccacgcttcaaacttcctgggtttctcgagctagt
gcaaggcagcgtgaagggcgtgctggtcgttgtcagccaggaacttgctaccatctttac
tctagattgcgagcagcttcactgcaagaataccaaactcctgaaattaataggatgcca
attgaagaactatgtttgcaggtcaaactgcttgatccaaagtgcagaatagcagacttt
ctaaagaagaccttggatcctccagttgctgagactgtaaaaaatgctataactgtgctt
caggatcttggtgctttaacacaagatgaacagttgacagatttgggtgagaagttaggt
tctcttccggtccatccatccacaagcaagatgctcctgtttggtatattgatgaactgc
cttgatcctgcattgacattggcatgtgcagtagattatagagatcctttcgtccttcca
gtcgatccaaatcagagaaaaagagccgatgcagccaaaatcgagcttgcttcattatat
ggtggatttagcgaccagcttgctgttgtggcagcatttgattgttggagatgtgctaaa
gacacgcgccaaaaagctttgttttgttcacaatattttgtcagttcaaccaccatgact
atgttgtcaagtatgcgaaaacagcttcagaatgaactagctcaaagaggatttcttcct
gctgaagcatctgcctgcaatataaatgctaaagctccaggtatcattagcgcagtcctt
atggctggcgcttaccccatggttggaaagctgcttcctccttgcaaaaatgccaggagt
acagttgtggaaacagcaagtggtgccaaagttcgattgcatccgtcttctgcaaactat
aacttgtcattaaataattcttctggatatccgctagtcatatatgatgaaattactcga
ggtgatggtgggtcgatgtctataaagaaatgttctgttgttgggtcatatccactactt
ctgcttgcttccgaaatggctgttgctccacctgatggtgataatcatgaagaggaaggt
tccagtggggatgaagtgattatgtcttctcctgataacactgtttcagttgttgttgac
cggtggctcagatttcatgcgacagctcttgatgttgctcaaatgtactgcctaagagaa
cgtctagtatctgctatacttttcaaagtccaacacccgcagcatgttctcccacctgct
cttggagcaacgatgtatgccattgcatgtatcttgacatatgatggcttgcctgctatg
gttcaatgtaacactggtgcttttgattcgaggccagcagaaaggagaggtggtggttat
attcgacctaatgatttccttatgtcattgctaacggacagagtcgcaccacttgccgag
tatctttctccggagaatattctgcccccgagtgctggtggtagatatagtctacccagc
aaaactgtaccagggccttcagcaccacaatcttccaaaaggcagcgtgccagtgctcgg
cgcccgaggcctcaatag
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