Lolium rigidum (rigid ryegrass): 124668195
Help
Entry
124668195 CDS
T09103
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd00040
Pentose and glucuronate interconversions
lrd01100
Metabolic pathways
Module
lrd_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
124668195
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
124668195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
124668195
NCBI-ProteinID:
XP_047061322
LinkDB
All DBs
Position
6:complement(53168952..53172091)
Genome browser
AA seq
401 aa
AA seq
DB search
MAMTKPMLSLLAHLHAALLLLSGAGAAVYDVTRYGARPDGVTDSTLPFLRAWADACRSPR
QATVLVPPGMFLLGSATFTGPCATHAVTFSIAGTLVAPTGYGWDATTGRWITFESVEGLT
VSGGVLDGRGSSLWSCKRQQQQQPHVHCPTGASSLTISNSRDVVVDGTRSTNSELFHMVV
LQSHGVTLQQVSVDAPEDSPNTDGIHIHMSSNVAVSNADIRTGDDCVSIGPGNSNLWIER
VSCGPGHGISIGSLGQQQGMAVEVVRNVTVKTTWFTGTTNGFRIKTWGTSKRGLVSGITF
VDSTMIGVHNPIIIDQNYCPGKKSCSDRSSGIKISQVRYIDIRGWSMTPVAVTFNCSRSN
PCSGISLQNVRLMYEGMRLAKSSCRNVNGRTTGLVVPPSCL
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgacgaagccgatgctgagcctgctggcgcacctccacgccgcgctcctgctc
ctctccggcgccggcgcggcggtgtacgacgtgacgcgctacggcgcccgccccgacggt
gtgacggactcgacgctgccgttcctccgcgcgtgggccgacgcgtgccgctcgccgcgc
caggcgacggtgctcgtgccgccgggcatgttcctgctggggagcgccacgttcaccggc
ccgtgcgccacccacgccgtcaccttctccatcgccggcacgctggtcgcgcccactggc
tacggctgggacgcgaccaccggccgctggatcaccttcgagtccgtggagggcctcacc
gtctccggcggcgtcctcgacggccgcggctcctccctctggtcctgcaagcggcagcag
cagcagcagccgcacgtccactgcccgaccggcgcctcgtctctgacgatctcgaactcg
agagacgtggtggtggacgggacgaggtcgaccaacagcgagctgttccacatggtggtg
ctgcagagccacggcgtgacgctgcagcaggtcagcgtggacgcgccggaggacagcccc
aacacggacgggatacacatccacatgtccagcaacgtggccgtctccaacgccgacatc
cgcaccggggacgactgcgtttccatcggcccgggaaactctaacctctggattgagcgt
gtctcgtgtggtccaggtcatggcataagcattggaagtttgggccagcaacaagggatg
gctgtggaggtggtgcgaaacgtgaccgtgaaaacaacatggttcaccggcacaacaaat
ggtttcaggatcaagacatgggggacctccaagcgaggcctcgttagtggtatcaccttc
gtggactccaccatgatcggcgtccacaaccctataatcatcgatcaaaattactgccct
ggaaagaaatcgtgctcagatcggagttcgggtatcaagatcagccaggtgaggtacatc
gacattcgtgggtggtcgatgacgccggttgccgtgaccttcaactgcagcaggagcaac
ccgtgcagtggaattagcttgcagaatgtgaggctcatgtatgagggcatgcgtcttgca
aaatcatcctgccggaacgtcaatgggagaacgactgggctagtcgtgcccccaagctgc
ctctga
DBGET
integrated database retrieval system