Lolium rigidum (rigid ryegrass): 124668376
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Entry
124668376 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124668376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124668376
03009 Ribosome biogenesis [BR:
lrd03009
]
124668376
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124668376
Spliceosome [BR:
lrd03041
]
Complex A
U1 snRNP components
U1 related factors
124668376
Complex B
124668376
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Helicases
124668376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
124668376
NCBI-ProteinID:
XP_047061487
LinkDB
All DBs
Position
6:48299735..48303790
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AA seq
569 aa
AA seq
DB search
MNPYADNRYADPSSYRDRRSDLAAAPVIAPQVPVGAANPYAAPYTPIAASAGGNFPRYGQ
GGGGGGYGGGMGYGGGRGGGGGFHGGGGRGGGNGRDGLDSISLQKPDFRGLIPFEKSFYV
ECPEVQAMSETDVAQYRQLRDITVEGREVPKPIRFFHEANFPDYCMQAIAKSGFVEPTPI
QAQGWPMALKGRDVIGIAETGSGKTLSYILPGLVHVGAQPRLEQGDGPIVLILAPTRELA
VQIQAEATKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIAIATPGRLIDMLEAGHTNLR
RVTYLVLDEADRMLDMGFEPQIRKILAQIRPDRQTLYWSATWPREVESLARQFLSNPYKV
MIGTAELKANHSIQQIVEVISDHEKYPRLSKLLSDLMDGSRILIFFQTKKECDKVTRQLR
MDGWPALSIHGDKAQSERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTI
EDYIHRIGRTGRAGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALESMSKSAGSMG
GGNNFRSRGRGGFGGNRSGSNNIPVRRRY
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgccgacaaccgctacgccgacccctcctcctaccgcgacaggcgcagc
gacctggccgcggctcccgtgatcgccccgcaggtccccgtgggcgccgcgaacccctac
gccgctccctacacgcccatagccgcttccgctgggggcaacttcccgcgctatggccag
ggcggcggcggcggcggctacggtggcggcatgggctacggcggcgggagaggcggcggc
ggtggcttccacggcggcggcggtagaggaggcggcaacgggagggacgggctagactcg
atctccctgcagaagccggatttccgcggccttataccgttcgagaagagcttctacgtc
gagtgccccgaggtgcaggccatgtcggagacggacgtggcgcagtaccgccagctccgg
gatatcaccgtggagggtcgggaggtgcccaagcctatccgcttcttccacgaagccaac
tttccagattactgcatgcaagcgatagccaagtccggatttgtggagccgacgcctatt
caagctcagggctggcccatggctttgaagggcagggacgtgattggcatcgcagaaact
ggctctgggaaaacgttatcgtacatactacctggcttggttcatgttggtgcacaacct
cggctagaacaaggtgatggcccaatcgtcttgatccttgccccgacaagagaactggct
gttcaaatacaggcagaagctacaaaatttggatcatactccagaactagaagcacatgt
atctacggtggagcacccaagggaccacaaatacgtgatcttaggagaggagtggaaatc
gccattgctacacctgggcggctgattgatatgctggaagctggtcacacaaatctacgt
agggttacataccttgtactggatgaggcagaccgtatgctagatatgggtttcgagcct
cagattcggaaaatattggcacaaatccgtccagacaggcaaactttgtactggagtgcc
acgtggccaagggaagttgaatccttggctagacaatttctttcaaacccttacaaggta
atgataggaacagctgaacttaaagctaatcattccatacaacaaattgtcgaagttatt
tcagatcatgagaagtatcccaggctgagtaagcttttatccgatctaatggatgggagc
cgaatcttgatattttttcaaacgaaaaaggaatgtgataaggttactcgacaacttaga
atggatggatggccagcgttatctatacatggtgataaagctcaatctgaaagggactat
gttctagccgagtttaagagtgggaagagtcctataatggctgccacagatgtagcagca
cgtggtcttgacgtgaaggatataaagtgtgtgatcaattttgatttcccaaccactatc
gaggattatattcacaggataggccggactggccgtgctggtgcaactggaatggctttt
acgttcttcacacactcaaatgcaaaatattcgaggaatcttgtcaagatcttgcgtgaa
gctggccaggttgtaaatccagctctagaatctatgtccaagtctgccggttctatggga
ggaggaaacaatttccggtcaagggggcgtggcgggtttggtggtaaccgttctggatca
aataacatcccagtaaggagaagatattga
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