Lolium rigidum (rigid ryegrass): 124668481
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Entry
124668481 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124668481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124668481
03009 Ribosome biogenesis [BR:
lrd03009
]
124668481
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124668481
Spliceosome [BR:
lrd03041
]
Complex A
U1 snRNP components
U1 related factors
124668481
Complex B
124668481
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Helicases
124668481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
124668481
NCBI-ProteinID:
XP_047061565
LinkDB
All DBs
Position
6:complement(323283810..323288523)
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AA seq
643 aa
AA seq
DB search
MATPGPRYAPPDPTLPKPWKGLIDGTTGYLYFWNPETKVTQYDRPMGPPPAPVAPAPAPA
PVAQPQYHHEERPRNRDHPPERHSESAGNRAPYADHKPRSDPSLEQRYSAGANPATMAPT
NPAPQATNGSSMSVDAYRAKHEITVIGNEKPAPFMSFQSTGFPAEILREVQQAGFSAPSP
IQAQSWPISLKGRDIVAVAKTGSGKTLGYLLPGFILCKSLRNNSRDGPTVLVLSPTRELA
TQIQDEAIKFGRSSRISSTCLYGGAPKGPQIRDIERGVDIVVATPGRLNDILEMGKVSLR
QVAYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRRIASDLLTNPIQV
NIGNTDELVANKSITQHVEVTTSMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDTLSRNL
SRQYRASAIHGDKSQAERDSVLSEFRSGRCPVLVATDVAARGLDVKDIRVVVNYDFPTGV
EDYVHRIGRTGRAGATGIAYTFFCDNDAKYASDLVKILEGANQTVSQQLRDMVGRGGYGG
RPRGRWASSNDSYGGQGSFGGHTRDSSSFQSSAYNSSSQYGGTPSFNASSNSNQTSGVSS
LPASGSNNQSGEGLSFHERFYSSRGGDRARSRSPPKAMGVSNW
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggggccccgctacgcgccgccagatccgacgctgcccaagccctggaag
ggcctcatcgacggcaccaccggctacctctacttctggaacccggagaccaaggtcacc
cagtacgaccgccccatgggcccgccccccgcccccgtcgcgcccgcccccgcacccgcc
cccgtcgcgcagccccagtaccaccacgaggagagacccaggaacagggaccatccgccg
gagcgccacagcgaatctgcaggaaaccgcgcgccatatgctgaccacaagcccaggagc
gatccttctttggagcagcgctattcagctggagcgaaccctgcaactatggctcccact
aacccagctccacaggctaccaatggaagcagcatgtcggtagacgcctaccgtgctaag
cacgagattaccgttatcggaaatgaaaagccagctccattcatgtcgtttcagtccacg
ggcttccctgcagagattcttagggaggtccaacaggcaggattctctgcaccaagtcct
atccaagctcaatcatggcctatttctctaaaagggcgtgatattgtagctgtggccaag
acaggttctggaaaaaccctgggttatctacttccaggatttattctttgtaagagcctg
cgaaacaattcacgggatggaccaacagtgctggttctctctccaaccagggaactagca
acacagattcaagatgaagcaatcaagtttggcagatcttcgagaatatcatctacttgt
ctatatggcggtgctccaaaaggccctcagataagagatatagagcgtggtgtcgatatt
gttgttgcaactcctggaagattgaatgacattctagaaatgggaaaagtgagccttcgt
caagtagcatatcttgttcttgatgaagctgaccgtatgcttgatatgggatttgagcca
cagataaggaaaattgtgaaacaagtacaacctaagaggcaaactcttatgttcactgcc
acttggccaaaagaggtgagaagaatagcgtcagatttgctgactaaccctatccaggtt
aacattgggaacactgatgagctggttgcaaataagtcgatcactcagcatgtggaagtt
accacaagtatggagaaacagagacgccttgagcagatcttgagatcacaggagcctgga
tccaaagtcataatattttgctccacaaaaaggatgtgtgatactctgtcaagaaatcta
tcacggcagtaccgtgcatctgccatacatggtgataaatcacaggctgagagggattca
gtgttgagtgaatttcgaagtggcaggtgcccagttcttgtagctactgatgtcgctgct
cgaggcttagacgtaaaggacatcagagttgtggttaactatgatttcccaacgggggtt
gaggactatgtccatagaattgggagaacaggtagagccggtgcgactggaatcgcatat
acattcttctgtgacaacgatgcaaagtatgcttcagatcttgtgaagattttggagggt
gcaaaccaaactgtctcacaacagttacgagacatggttggccgcggagggtatggtggc
aggccacgggggcgttgggcatcttctaatgattcctatggtggccagggatcttttggc
ggccacactcgagatagttcaagctttcagtcaagtgcctataacagcagcagtcaatac
ggtggcactcctagcttcaatgccagcagtaacagcaatcagaccagtggagtttcaagc
ttacctgccagtggcagcaacaatcagtcgggtgaaggtctcagctttcatgaaaggttc
tacagctctagaggtggtgaccgtgctaggagcaggagtcctcccaaggccatgggggtc
tccaactggtaa
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