Lolium rigidum (rigid ryegrass): 124669845
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Entry
124669845 CDS
T09103
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04142
Lysosome biogenesis
lrd04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
124669845
04148 Efferocytosis
124669845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lrd04131
]
124669845
Membrane trafficking [BR:
lrd04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
124669845
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
VPS18_solenoid_2nd
zf_RING_Vps8_fungal
Beta-prop_WDR5
WD40_WDHD1_1st
Beta-prop_IFT122_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_THOC3
WD40_Prp19
TPR_YpiA
zf_RING_Vps8
zf-RING_2
WDR55
Beta-prop_TEP1_2nd
WD40
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
124669845
NCBI-ProteinID:
XP_047062342
LinkDB
All DBs
Position
7:10510227..10516968
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AA seq
946 aa
AA seq
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MSSTARRGHPALVNGDGGYDREEEDEDEEGYGAEAEAEPEEEPRLKYQRLGGSVPAILST
DAAAAIAVTDRAVLLGTHDGTLHILDFQGNESKQIAAHTATINDISFEDREYIGSCSDDG
TVVISNLFTDDKLKFEYHRPMKAIALDPDYSRNYKRFATGGLAGQVLVLTKKTWGGGYNK
KVLREGEGPIHSMKWRADLLAWANDAGVKVHDMKTDRGIAFIERPKGIPRPEVLLPHLVW
QDDTVLVIGWGTSVKIAAIRTESQGLNGMQRSISAVSSDKYVDIVGSFQTGYHISGIAPF
GDLLVMLAYIPEEDDKDKKISTSAPLRQGTAQRPEIHLVSWKNDVVTTDALPIHGYEHYK
AKDYTLAHAPFSGSSNAGGQWAAGDEPLYYIVSPKDIVVAKPRDTEDHIAWLLQHGWHEK
ALAAVEEGQGRTELLNEVGSRYLDHLIIERKYAEAAQLCPKILRGSPSAWERWVFHFAHL
RQLSVLIPYIPIDNPQLSDTAYEVALVALTTNATFHELLLTTIKSWPPALYSASPVISAI
EPQLSSSSMTDPLKEALAELYVINSQYEKALSLYAELLKPEVFEFIEKHNLHDAIHDKVV
NLMILDSKRAIHLLIQHRDIIPPFEVVEQLLHTSKNCDKKYLLHQYLHALFETDIHAGKD
YHDMQLELYADYEPRMLIPFLRTSQHYRLDKAYEIFSRRELVREQVFVLGRMGNAKEALS
TIINKLEDIQEAVEFVTEQHDDELWEELIKQCLQKPEMVGMLLEHTVGNLDPLYIVNLVP
DGLEIPKLRDRLVKIVTDYRTETSLRNGCNDILKTDCVNLLVKYYQEARRGVCMATMDEE
AQGTTRADEGSSRIGERSSTSLRSLEIKSRTRCGARCCLCFDPLSIQDISIIVFYCCHAY
HQSCLEGGLDSMKSTARDSDEDSEDDDGSPSAESKMRCVLCTTAAA
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccaccgcgcggcgcgggcacccggcgctggtgaacggggacggggggtacgac
cgggaggaggaggacgaggacgaggaggggtacggcgcggaggcggaggcggagccggag
gaggagccgcggctcaagtaccagcgcctcggcggcagcgtgccggcgatcctctccacc
gacgccgccgccgccatcgccgtcaccgaccgcgccgtgctgctcggcacccacgacggc
accctccacatcctcgacttccagggcaacgagtcgaagcaaattgccgctcacacagca
accataaatgacatcagttttgaagaccgtgaatatattggaagctgctcagacgatggc
acagtagtaataagcaacctcttcaccgatgataagctcaagtttgagtaccatcggccc
atgaaagcaattgcgttagaccctgactactcccgaaactacaaaagatttgctacaggt
ggtttagccggtcaagtgcttgtgctgacaaagaagacttggggaggaggctataacaaa
aaggttctgcgtgagggcgaaggaccgatccattctatgaagtggagggcagatcttctt
gcctgggctaatgatgcaggggtgaaagtgcatgatatgaaaacggacagaggaattgca
ttcatagaaagaccaaaaggaattcctcgaccagaagttttgcttcctcacttggtctgg
caggacgatacagttttagttattgggtggggaacaagtgtcaagattgctgccattcga
acagaatctcaaggactcaatggaatgcaaaggagtatttctgcagtaagttctgataag
tatgttgatatagtgggctctttccaaacaggctaccacatatctgggattgctcccttt
ggggatcttttggttatgcttgcatatatccctgaagaggatgacaaagataaaaaaatt
agcacttctgctcctttacggcagggaacagcgcagcgtccagaaatacatcttgtatca
tggaaaaatgatgtggttactactgatgctctgcccattcatggttatgagcactataag
gcaaaggattacactcttgctcatgcgcctttctcaggaagtagcaatgcaggtggacag
tgggctgctggcgatgaacctctttattacatcgtctctcctaaggatattgtggtagca
aagccaagagatactgaagaccatattgcgtggcttcttcaacatggctggcatgaaaag
gcattggctgcagttgaggaaggacaagggaggactgagcttcttaatgaggtgggttca
agataccttgatcacctgataattgaaagaaaatacgctgaagcagcacaactctgtcca
aagatactgcgaggatctccttcagcatgggagaggtgggtctttcactttgcacatctc
cgccagctttctgtgttgatcccttacattcccattgacaatccacaactgagtgatacc
gcttatgaggttgcccttgtagctctaactaccaacgctactttccatgagcttctcttg
actacgataaaaagctggccacctgcattatactctgcttcaccagtcatatctgccatt
gagccacagctcagttcctcatcgatgactgacccattaaaagaggctttagctgaactg
tatgtgatcaatagtcaatatgaaaaggccctttctctctatgctgaactcctgaagcct
gaagtatttgagtttatcgagaagcataacctacatgatgcaattcatgataaggttgtt
aatcttatgatactggatagtaaaagagcaattcacctgttgatccaacatcgtgatatc
attcccccatttgaagtcgtggagcaattgttgcatactagtaaaaattgcgacaagaaa
tatttgttgcatcagtatttacatgctctgtttgagacagacattcatgctggaaaagat
tatcatgatatgcagctggagttgtatgcagattatgagccaaggatgttaatacccttc
cttcgtaccagccagcattacaggcttgacaaggcatatgaaatattttcacgaagggaa
cttgtcagagagcaagtttttgttcttggtcgtatgggaaatgctaaggaagctctttct
acgattataaacaaactggaagacatacaggaggctgttgaatttgttacggagcaacat
gatgatgaactatgggaggaactgataaaacagtgcctccaaaagcctgaaatggtcggg
atgctgttggaacatactgtcggcaatctcgatcctctgtacattgtcaatttggttcca
gatgggctagaaatacctaaattgcgggatcgccttgtaaaaattgtgacagactatcga
acagaaacttcactgaggaatggatgcaacgatatattaaagacggattgtgttaatctt
ctggttaaatactaccaagaggctcgacgcggagtctgcatggcaaccatggacgaggag
gcacaaggaacaacaagagccgacgaaggttcttcacggataggcgagagatcgtcgacg
agtttacgtagcttagagatcaaatccagaacgaggtgcggtgctcgatgttgcctgtgc
ttcgatcctctatctatccaggacatctctatcatcgtgttctactgctgccacgcgtac
catcagtcttgcctcgaaggtgggttagactcgatgaagtcaacagctcgggatagcgat
gaagactcggaggacgatgatggctccccctcggccgagtctaagatgcgctgtgtattg
tgtaccacagctgccgcataa
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