Lolium rigidum (rigid ryegrass): 124669859
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Entry
124669859 CDS
T09103
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124669859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124669859
Spliceosome [BR:
lrd03041
]
Complex A
Other components
Complex A specific factors
124669859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
zf-CCHC
eIF3g
KH_12
PHD_4
RRM_5
DUF6319
KH_PNO1_2nd
Motif
Other DBs
NCBI-GeneID:
124669859
NCBI-ProteinID:
XP_047062355
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Position
7:<157384530..157387785
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AA seq
757 aa
AA seq
DB search
MDSAETLAARSPSREPSSDPPRDASSEPHHNGSATGAPEADSSSRRRRRSRWEQSNDDSG
ANSGGEGGAGRKRKSRWAEEEPRPTIALPDFMKDFAAEMDPEVHNLNSRLLEISRLLQSG
LPLDDRPEGARSPSPEPIYDNLGIRINTREYRARERLNRERQEIISQLIRRNPAFKPPAD
YRPPKLHKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGKLLQ
KRDLKPDPSENEDLHVLVEADTAEALEAAAGMVEKLLTPVDEVLNEHKRQQLRELAALNG
TIRDDEFCRTCGEPGHRQYACPNRSSTFKSEVQCKICGDGGHPTIDCPVKGTSGKKMDDE
YQNFLAELGGSAPESMNKSGGPMLAITGGGGGGGSGSGSTSPWTPGGGAATPGANGIKKD
YDETNLYIGYLPPMFDDSGLISLFSQFGEIVMAKVIKDRNTGQSKGYGFVKYADVSQANA
AIAAMSGYHLEGRTIAVRVAGKPPQPAAPPGPPMYHSADPSAGGYNSQPYMGGHPPPPPQ
GNYAPAPWGQPPPYASYPPPPPPGMYNPAPGQTAPPPYGMQYPPPPAPVPPPGTTASADG
AQNYPPGVTPPSSGAPTQPVPAPGYGTSGAQNMPHMYPPPPYSYAPYYQSVPPPPPPPAS
VDPSQSIATAPWATHNAPPPPPPASVDPSQSIATAPWATHNAPPPPPPVDSSQSNSSAPW
ANHNAPPPPPPLSSSIEPPPAPYGADAEYEKFMSEMK
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggattccgccgaaaccctagcagcccgctccccatcccgggagccctcctccgacccg
ccccgcgacgcctcctccgagccccaccacaacggctccgccaccggcgcccccgaggcc
gactcgtcctcgcgccgccgccgccgcagccgatgggagcagtccaacgacgactcgggc
gccaactccggcggcgagggcggcgcgggccgcaagcgcaagtcgcggtgggccgaggag
gagccccgccccaccatcgcgctcccggatttcatgaaggacttcgccgccgagatggat
cccgaggtgcacaacctcaactcgcgcctcctcgagatctcgcgcctgctgcagtcgggc
ctgcccctcgacgaccgccccgagggcgcgcgctcgccctcccccgagcccatctacgac
aacctcggcatccgcatcaacacccgcgagtaccgcgccagggagcgcctcaaccgcgag
cgccaggagatcatctcccagctcatccgccgcaaccccgccttcaagccccccgccgat
taccgcccgcccaagctccacaagaagctctacatccccatgaaggagtacccgggctac
aacttcattggcctcatcatcggcccccgtggcaacacgcagaagcggatggagaaggag
acgggggccaagattgtaatccgggggaagggcagcgtcaaggagggtaagctgctgcag
aagagggacctcaagccagatcccagtgagaacgaggaccttcatgtgcttgttgaggcc
gacactgccgaggccttggaggcagctgcgggcatggtggagaagctgcttacccccgtg
gatgaagtgctcaatgagcacaagcggcagcagctgcgggagcttgcagcgctcaacggg
acgattagggatgatgagttctgcaggacctgcggcgagccgggtcaccggcagtatgcc
tgccctaataggtcatcaacgtttaagagcgaggtgcagtgtaagatctgtggtgatggt
ggacaccccacaattgattgtccagtcaagggcacatccgggaaaaagatggacgatgag
taccagaacttccttgctgagcttggagggagtgcacctgagtcgatgaataagtctggt
ggtccgatgctggctataacaggtggtggtggtggtggcggcagcggcagtggcagtacc
tcgccatggactccaggtggtggtgcagcaacaccaggagcaaatgggatcaagaaggat
tatgacgagaccaatctttatattgggtacttgccgcctatgtttgatgattcagggctc
atcagtctgttctctcaatttggagagattgtcatggcaaaggttatcaaggatcgtaac
acggggcagagcaaaggatatggatttgtgaaatatgcagatgtctcccaggctaatgct
gcaattgctgcgatgagtggttaccatcttgagggaagaactatcgcggttagagttgca
ggcaagccaccacagccggctgctccccctggcccaccaatgtaccactccgcagatcct
tctgctggtggttacaactcgcagccctacatgggaggacatccaccaccacctcctcaa
ggtaactatgctccagcaccttgggggcaaccaccaccttatgcttcctaccctccaccg
ccaccgccaggcatgtacaaccctgcaccaggccagactgctccacctccatatggtatg
cagtacccaccaccaccagctccggtacctccaccaggcactactgcatcagctgatgga
gcgcagaactaccctccgggtgtaacgccaccaagttctggtgcacctactcagcctgta
ccagctccaggatatggaacctctggtgcacaaaacatgccacatatgtaccctccacca
ccttatagttacgccccatattatcaatctgtgcccccgcctccgccaccaccagctagt
gttgatccgtcgcaaagcattgcaacagcaccttgggccacccacaatgcaccgcctccg
ccaccaccagctagtgttgatccgtcacaaagcattgcaacagcaccttgggccacccac
aatgcaccgcctccaccaccaccggttgattcctcgcagagcaattcaagtgcaccttgg
gccaatcacaatgcaccgccgccaccacctcctctgtcatcttccattgaaccaccccct
gctccctatggtgctgatgcagagtatgaaaaatttatgtcagaaatgaaatga
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