Lolium rigidum (rigid ryegrass): 124670317
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Entry
124670317 CDS
T09103
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124670317
03015 mRNA surveillance pathway
124670317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124670317
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124670317
mRNA cycle factors
P-body specific factors
124670317
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
124670317
NCBI-ProteinID:
XP_047062775
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All DBs
Position
7:148145708..148158896
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AA seq
1176 aa
AA seq
DB search
MEHMENESPEVKNQHEEGHHNSEVARLEEYKKLIDAKAALRQSNLNPERPDASYLRTLDS
SIKRNTAVIKKLKMISDEQKDSLMDELKSVNLSKFVSEAVSHICEVKLRSADMQAAVQIC
SLLHQRYKDFSPCLIQGLLKAFFPGKSGDDLDSDKNSRAMKKRSTLKLLMELYFVGIVED
ASTFINIIKDLTSVEHLKDRETTQTNLSLLASFARQGKHFLGLQKHGQEAYDEFFMGLNV
TDDLKTFFKKALCSYYDAAAAILQSEHASLRAMESENAKILNAKGELSDENTVLYEKLRK
SFDQLLRCVSSLAEALDMQPPVMPDDGHTTRVTTGTELSPSGKDFTVVEPIWDDEDTKAF
YESLPDLRVFVPGVLLGEAEPKLVDQQGEVHEQTSEIKLEQGIKLEHGTKVQDNAETSTS
EHQLEGKEHVGAKNREKKEKSDKENSKEKDADRKGDIEREKVRATDGASLDNLLLRLPRC
ISRDLIDQLTVEFCYLNSKANRKKLARALFNVPRTSLELLPYYSRLVATLSTCMKDLPSM
LLSMLEEEFNFLINKKDQIKIESKIKNIRFIGELCKFKVAPSGLVFSCLKACLDDFSHHN
IDVACNLLETCGRFLYLSQGTAVRMSNMLEILRRLKNVKNLDPHHSTLVDNAYYLCKPPE
RSARVSKVRPPLHQYIRKLLFSDLDKTSVQHVLRQLRKLPWAECEQYLVKCFLKVHKGKY
SQVHLIALLTAGLSHYHDDFPVAVVDEVLEEIRVGLELNDYAMQQRQLAHMRFLGELYNY
EHIDSSVIFETLYLIIVFGHGTPEQDLLDPPEDFFRIRMIIILLQTCGHYFDRGSSKRKL
DKFLLYFQRYVLNKGPLPLDVEFEVQDMFAELRPNMTRYSSMELLASALVELEENEKTKQ
PEIAAFDASCKSSASRPDKNGRDHEEAADSERYSGVHRDGHEDVDSLYEEKSDDRSENGV
DSDVDDTPAGSDEEETVKVRRKVVKVDSKEQEEFDRELKALLQESLESRKLELRTKSTLN
MAVPMSIFEGPKEPRATETESGQESAAEESGNARAGSKVNVCVRVLVKKGHKQQTKQMLI
PGDCSLVQSTKQQEAALLEEKQNIKQKILEYNEREEEELSGGSFQTGSWGQGGNSPVSSI
SSAGRGTWDGSGRGGRGRQQRYYVAGGIYHGYGRGR
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggagcacatggaaaatgagagtcccgaggtaaaaaatcaacatgaagaggggcatcat
aacagtgaggtggcccgtcttgaagaatacaagaagcttattgatgcaaaggctgcgctc
cgtcagagtaacctaaaccctgagaggcctgatgcaagttacctgagaacacttgattcc
agtattaagcgcaacacggcagttatcaagaagctcaaaatgataagtgatgaacaaaag
gatagcttaatggatgaattgaaaagtgtcaacttaagcaaatttgtgagtgaagcagtt
tctcacatatgtgaggtcaaacttcgttctgctgacatgcaagctgctgtccagatctgt
tcactgctccatcaaagatacaaggacttctctccttgccttattcaaggactcctgaaa
gccttctttcctgggaaatctggagatgatctggattcagataagaactcaagggccatg
aagaaaagaagcacgctaaaacttcttatggaactgtactttgttggaattgttgaagat
gctagtactttcataaacattataaaggatcttacatcagtggagcatttgaaggaccgt
gaaacgactcagacaaatttgtctctccttgccagttttgctcgccaaggaaaacatttt
cttggattacaaaaacacgggcaagaagcttatgatgagttttttatgggcctcaatgtt
accgatgatctgaaaacgttcttcaagaaagccttgtgctcttattatgatgccgcagct
gcaattctccagtcagaacatgcgtctcttcgtgcaatggagtctgaaaatgcaaagatt
ttaaatgccaaaggcgaactaagtgatgagaatactgtcttgtatgagaagcttcggaaa
tctttcgatcagttattgcgctgtgtttcatccttagctgaagctcttgatatgcagcct
cctgttatgccagatgatggacatacaacaagggtaactacagggactgagttatcccct
tctgggaaagacttcactgtagtagaacctatctgggatgatgaagacacaaaggcattt
tatgaatctttgcctgatctcagagtattcgtgcctggtgtactattgggagaagctgaa
ccaaagttagtagatcaacaaggagaagtccacgaacaaactagcgagattaaattggaa
caaggaattaaattggaacacggaactaaagttcaagacaatgctgaaacttctacttct
gaacaccaattggagggaaaagaacatgttggagccaagaatagagaaaagaaagagaaa
tcagacaaagaaaattctaaagaaaaagatgctgaccggaaaggggatattgaaagagaa
aaagtaagagccacagatggtgcaagtttggataacctgctactgaggctaccgagatgt
atcagccgagatctaattgatcaattgacggtagagttttgctatctgaattctaaagca
aacaggaagaaacttgcgcgagccttattcaatgttccaaggacttcgctggaactgtta
ccatattattcccgtttagttgcaactttgtccacatgcatgaaggatctcccaagtatg
ctcttatcaatgcttgaagaagagtttaactttttgatcaataagaaggatcagatcaaa
atagaatcaaaaattaaaaacataaggtttattggggaattgtgcaaattcaaagttgca
ccttcaggccttgtttttagctgtttgaaggcttgcttagatgatttcagccatcataac
attgatgtggcctgcaatcttcttgagacctgtggacgctttctttatctctcacaagga
actgcagttcgcatgtcaaacatgctggaaatactgaggaggttgaaaaatgtgaagaat
ttggatccacaccacagcacacttgtagacaatgcctattacttgtgcaaaccacctgaa
agatctgccagagtctctaaagttcgcccacctctgcatcagtacataaggaagctgctt
ttctcagatcttgacaaaacaagtgttcaacatgttcttcgtcagttacgcaagctacct
tgggctgagtgtgagcagtacctggtgaagtgttttctcaaggttcacaagggaaagtat
agccaagttcatctgattgctcttctaactgctggtcttagtcattaccatgatgatttt
cccgtggctgtggtagatgaggttcttgaggagattagagttggacttgagctgaatgac
tatgcaatgcaacaacggcaacttgcccacatgcgattccttggggagctatataactat
gagcatatcgattcgtcagttatttttgagacactgtaccttattattgtattcggtcat
ggaacaccggaacaagatctgcttgatcccccagaagattttttcaggataaggatgatc
attatacttctccagacttgtggtcactattttgatagaggctcttcaaaaagaaagctt
gacaagtttttgctatattttcaaagatatgttctcaacaaagggccattgccacttgac
gttgagtttgaagttcaggatatgtttgctgagctacggcctaacatgactaggtattca
tctatggaattgttggcttctgctctggttgagcttgaagaaaatgagaagacaaaacaa
cctgaaattgctgcttttgatgccagctgcaaaagctcagcaagcagacctgacaaaaac
ggtagggatcacgaagaagcagcagacagtgaaagatattcaggcgtccatcgcgatgga
catgaagatgtggactctctgtacgaagaaaaatcagatgataggtcagagaatggtgtc
gacagtgacgttgatgatacacctgctggttctgatgaagaagaaactgtcaaggttaga
cgtaaggtggtaaaagttgactctaaggagcaagaagagtttgaccgggagctgaaggcc
cttctacaggaaagcttggagtcacgtaagttggagctacggacgaagtccactttgaac
atggccgtgccgatgagtatctttgaggggccaaaggagccaagagccactgaaacagag
agtggacaagaaagtgcggcggaggaaagcggaaatgccagggctggtagcaaggtcaac
gtgtgcgtgagggtgctagtgaagaaagggcacaagcagcagacgaagcaaatgcttatc
cctggcgactgctcgcttgttcagagcacgaagcagcaagaggcagctctgctcgaggag
aagcaaaacattaagcagaagattcttgaatacaatgagagggaggaggaagaactcagc
ggagggtcattccaaactgggtcctggggtcaaggtggaaacagccctgttagcagtatc
agctccgctggacgtggtacctgggatggttcaggcaggggtgggcgtggtcgacagcag
cggtactatgtcgctggcgggatctaccatgggtatggcaggggaaggtga
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