Lolium rigidum (rigid ryegrass): 124670762
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Entry
124670762 CDS
T09103
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124670762
03015 mRNA surveillance pathway
124670762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124670762
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124670762
mRNA cycle factors
P-body specific factors
124670762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
124670762
NCBI-ProteinID:
XP_047063189
LinkDB
All DBs
Position
7:127475983..127483339
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AA seq
506 aa
AA seq
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MKDPAHRTKVVLRRLPPAISQQAVVDQVDARFAGRYDWACFRAGNASQKNHRYSRLYLNF
KSPEDVVEFAEFFNNHVFVNEKGAQFKALVEYAPSQQVPKSNIKKDARQGTITKDPEYLE
FLELISKPTEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRSVSSR
LSRKVSGVVTSSSSPSKRASERRRASTSSYVVRENAKEKPTYILAPKRDDHTREKIIAGT
SEGASGGPSWSPQVIDGKKDKIVLLKGRARVDSNISDSSTPQQSLPPSRNTPPSSSRQDQ
RHEASGRIIKTILSNKEGRHGIASQHEQEGHMVNADKDKRPPRVPNSRSIVKDQIIENAE
KSHYDDKHNHVHGSGPIGEKIERQARNRDRPDRGVWAPRRYDKSATGGSTQASSSEFQLM
QSHSEDNFAQQADGPGERKIDTRSPGGRGGLVENGNRHGNRRGPPRGLKEMEISPITSDG
KPPKRGPASYGAHERQVWVQKSSSGS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccccgcgcaccgcaccaaggtggtgctccgccggctgccgccagcgatttcg
cagcaggccgtcgtggaccaggtcgacgcgcgcttcgccgggcgctacgattgggcttgc
ttccgcgccgggaatgccagccaaaagaatcatcgatattctcgtctctacctcaacttc
aagagcccagaagatgttgttgagtttgctgagttcttcaacaatcatgtatttgtgaat
gaaaagggtgctcaatttaaagctcttgtggaatatgcaccatcacaacaggttccgaag
tcaaatatcaagaaggatgctcgtcagggaactataacaaaagatccagaatacttggag
tttcttgagcttatatcaaagcctactgaacatttgccaagtgctgaaattcagcttgaa
aggaaagaagctgaaagagcagctgctggaaaggagccaccagttgtgacacctctcatg
gtttatgttcgtcagcaaagggcagctaagagtatggctcagaggtctgtaagcagtaga
ctaagcagaaaagtttcgggtgtggtaactagcagttctagtccttctaaaagggcctct
gaaaggcgcagggcatccacttcatcgtatgttgtgcgagaaaatgctaaggagaagcca
acttacatcttagcgccgaagagagatgatcatacaagagagaaaattattgctggaact
tcagaaggtgcaagtggagggccatcttggtctcctcaggttattgatggtaaaaaagac
aaaattgtacttttgaaagggcgagcaagggttgattccaatatatctgatagctcaact
ccgcagcagtctctgcctccttcaagaaatacgcccccatcaagttctagacaagaccag
cgccatgaggccagtggcagaattattaagactatactttcaaacaaggaaggacgccat
ggaatagcatctcaacatgagcaagaaggtcacatggttaatgctgacaaggataagcgc
ccaccacgggttccgaattcgcgttccattgtgaaagatcagattattgaaaatgctgag
aaaagccactatgatgacaagcataatcatgtgcatggttctggacctattggtgagaag
attgaaaggcaggccagaaatagagataggcctgaccgtggtgtatgggcccctcgtcgc
tatgataagtctgcaacaggaggtagtacacaagcctcatcgtctgagttccagctaatg
cagtcacattctgaggacaatttcgctcagcaagcagatggccctggagagagaaaaata
gacacaaggagtcctggtggccgtggaggccttgtggagaatggaaacaggcatggcaac
cgccgtggtccgccacgtgggctgaaggagatggagatctctcctattacatctgatgga
aaacctccgaagaggggccctgctagctatggggctcatgagagacaagtatgggttcaa
aagtcaagttcaggatcgtga
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